Locus 5428

Sequence ID 2L_DroMel_CAF1
Location 15,465,045 – 15,465,147
Length 102
Max. P 0.610309
window8621

overview

Window 1

Location 15,465,045 – 15,465,147
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.22
Mean single sequence MFE -31.90
Consensus MFE -14.00
Energy contribution -14.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.02
Structure conservation index 0.44
SVM decision value 0.16
SVM RNA-class probability 0.610309
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15465045 102 - 22407834
GCGACCAUGUGGCAACUGGCC---GACCAUAAUGCAACAUGACAUGCGCCGCAUGUGCAG-----------CAACACAGCCACAGAGUCUC--GGGCCGA--GUUGCAAAUAUGAGUUCA
(((..((((((((...(((..---..)))....(((........)))))))))))))).(-----------((((.(.(((...(.....)--.))).).--)))))............. ( -31.90)
>DroVir_CAF1 238346 92 - 1
ACAUGCGGCUCUCAACUGGC----AAGCAUAAUGCAACAUGACAUGCGCCGCAUGUGCAA-----------CACAACAGCCG-------------AGCAAAUGUUGCAAAUAUGAGUUCA
(((((((((.((((....((----(.......)))....)))...).)))))))))((((-----------((.....((..-------------.))...))))))............. ( -25.10)
>DroGri_CAF1 220335 92 - 1
GCGAGUUGCUUGCAACUCGC----GAGCAUAAUGCAACAUGACAUGCGCCGCAUGUGCAA-----------CACAACAGCCG-------------ACCGAAUGUUGCAAAUAUGAGUUCA
((((((((....))))))))----(((((((.((((((((.((((((...))))))((..-----------.......))..-------------.....))))))))..)))..)))). ( -31.60)
>DroYak_CAF1 211041 102 - 1
GCGGCCAUGUGGCAACUGGCC---GACCAUAAUGCAACAUGACAUGCGCCGCAUGUGCAG-----------CAACACAGCCGCAGAGUCUC--GGGCCGA--GUUGCAAAUAUGAGUUCA
.((((((.((....)))))))---)((((((.((((((..(((.((((..((.((((...-----------...))))))))))..)))((--(...)))--))))))..)))).))... ( -34.80)
>DroMoj_CAF1 248742 92 - 1
ACAAGCCACUCUUAACUGGC----AAGCAUAAUGCAACAUGACAUGCGCCGCAUGUGCAA-----------CACAACAGCCG-------------AGCAAAUGUUGCAAAUAUGAGUUCA
....((((........))))----...((((.((((((((....(((.(.((.(((....-----------....))))).)-------------.))).))))))))..))))...... ( -24.50)
>DroAna_CAF1 217146 118 - 1
GCGACCAUGUGGCAACUGGCCGGCGACCAUAAUGCAACAUGACAUGCGCCGCAUGUGCAACAACAGUGCAGCACCACAGCCGCGGAGUCUCGCGGGCCGA--GUUGCAAAUAUGAGUUCA
..((((((((.((((((((((.((((.......(((........))).((((.((..(.......)..))((......)).))))....)))).)))).)--)))))..))))).))).. ( -43.50)
>consensus
GCGACCAUCUGGCAACUGGC____GACCAUAAUGCAACAUGACAUGCGCCGCAUGUGCAA___________CACAACAGCCG_____________ACCGA__GUUGCAAAUAUGAGUUCA
...........................((((.((((((...((((((...))))))((....................))......................))))))..))))...... (-14.00 = -14.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:58 2006