Locus 5427

Sequence ID 2L_DroMel_CAF1
Location 15,463,053 – 15,463,158
Length 105
Max. P 0.707008
window8620

overview

Window 0

Location 15,463,053 – 15,463,158
Length 105
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 95.69
Mean single sequence MFE -26.65
Consensus MFE -22.55
Energy contribution -22.89
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.85
SVM decision value 0.37
SVM RNA-class probability 0.707008
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15463053 105 + 22407834
UUGAUUAGUUAUAUGCCAACUU-----AAGCAUAAAAUAUGAUUCCUGGCCAAGAGUUAACGGGCUCCAAUUGGCUUUGACUUGGCCCGAGAUCAUUUAUCAAAAGAAUG
(((((..(((.(((((......-----..))))).)))(((((..(.(((((((((((((..(....)..))))))....))))))).)..)))))..)))))....... ( -28.00)
>DroSec_CAF1 201086 105 + 1
UUGAUUAGUUAUAUGCCAACUU-----AAGCAUAAAAUAUGAUGCCUGGCCAAGAGUUAACGGGCUCCAAUUGGCUUUGACUUGGCCCGAGAUCAUUUAUCAAAAGAAUG
(((((..(((.(((((......-----..))))).)))(((((..(.(((((((((((((..(....)..))))))....))))))).)..)))))..)))))....... ( -25.80)
>DroSim_CAF1 207110 105 + 1
UUGAUUAGUUAUAUGCCAACUU-----AAGCAUAAAAUAUGAUGCCUGGCCAAGAGUUAACGGGCUCCAAUUGGCUUUGACUUGGCCCGAGAUCAUUUAUCAAAAGAAUG
(((((..(((.(((((......-----..))))).)))(((((..(.(((((((((((((..(....)..))))))....))))))).)..)))))..)))))....... ( -25.80)
>DroEre_CAF1 211717 105 + 1
UUGAUUAGUUAUAUGCCAACUU-----AAGCAUAAAAUAUGAUGCCUGGCCAAGAGUUAACGGGCUCCAAUUGGCUUUGACUUGGCCCGAGAUCAUUUAUCAAAAGAAUG
(((((..(((.(((((......-----..))))).)))(((((..(.(((((((((((((..(....)..))))))....))))))).)..)))))..)))))....... ( -25.80)
>DroYak_CAF1 208992 105 + 1
UUGAUUAGUUAUAUGCCAACUU-----AAGCAUAAAAUAUGAUGCCUGGCCAAGAGUUAACGGGCUCCAAUUGGCUUUGACUUGGCCAGAGAUCAUUUAUCAAAAGAAUG
(((((..(((.(((((......-----..))))).)))(((((..(((((((((((((((..(....)..))))))....)))))))))..)))))..)))))....... ( -30.40)
>DroAna_CAF1 214766 109 + 1
UUGAUUAGUUAUAUGCCAAGUUGUGCCAAGAAUAAAAUAUUAUCCCUGGCCAAAAGUUAACGGGCUUCAAUUGGCUUUGACUUGGCCCGAGAUCAUUUAUCAA-AGAAUG
(((((.(((.((..(((((((((.((((.(.((((....)))).).))))).((((((((..(....)..)))))))))))))))).....)).))).)))))-...... ( -24.10)
>consensus
UUGAUUAGUUAUAUGCCAACUU_____AAGCAUAAAAUAUGAUGCCUGGCCAAGAGUUAACGGGCUCCAAUUGGCUUUGACUUGGCCCGAGAUCAUUUAUCAAAAGAAUG
(((((..(((.(((((.............))))).)))(((((..(.(((((..((((((..((((......))))))))))))))).)..)))))..)))))....... (-22.55 = -22.89 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:58 2006