Locus 5424

Sequence ID 2L_DroMel_CAF1
Location 15,458,227 – 15,458,318
Length 91
Max. P 0.963545
window8611

overview

Window 1

Location 15,458,227 – 15,458,318
Length 91
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 96.16
Mean single sequence MFE -22.96
Consensus MFE -22.80
Energy contribution -22.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.99
SVM decision value 1.55
SVM RNA-class probability 0.963545
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15458227 91 - 22407834
-------UGAGAUACUUCGGUUAAUUUCAGGCAGCCGCUUUCGGUGUGUAAUCCAUUUUAAUGCCAACACCAUUACGAACAGUAGCCUCAGUGUCACA
-------...((((((..(((((..(((((((....))))..(((((......(((....)))...))))).....)))...)))))..))))))... ( -22.80)
>DroSec_CAF1 196345 91 - 1
-------UGAGAUACUUCGGUUAAUUUCAGGCAGCCGCUUUCGGUGUGUAAUCCAUUUUAAUGCCAACACCAUUACGAACAGUAGCCUCAGUGUCACA
-------...((((((..(((((..(((((((....))))..(((((......(((....)))...))))).....)))...)))))..))))))... ( -22.80)
>DroSim_CAF1 202306 91 - 1
-------UGAGAUACUCCGGUUAAUUUCAGGCAGCCGCUUUCGGUGUGUAAUCCAUUUUAAUGCCAACACCAUUACGAACAGUAGCCUCAGUGUCACA
-------...((((((..(((((..(((((((....))))..(((((......(((....)))...))))).....)))...)))))..))))))... ( -22.80)
>DroEre_CAF1 206677 98 - 1
GUUCAGCUGAGAUACUUCGGUUAAUUUCAGGCAGCCGCUUUCGGUGUGUAAUCCAUUUUAAUGCCAACACCAUUACGAACAGUAGCCUCAGUGUCGCA
((...((((((.(((((((.........((((....))))..(((((......(((....)))...)))))....)))..))))..))))))...)). ( -23.60)
>DroYak_CAF1 203950 91 - 1
-------UGAGAUACUUCGGUUAAUUUCAGGCAGCCGCUUUCGGUGUGUAAUCCAUUUUAAUGCCAACACCAUUACGAACAGUAGCCUCAGUGUCACA
-------...((((((..(((((..(((((((....))))..(((((......(((....)))...))))).....)))...)))))..))))))... ( -22.80)
>consensus
_______UGAGAUACUUCGGUUAAUUUCAGGCAGCCGCUUUCGGUGUGUAAUCCAUUUUAAUGCCAACACCAUUACGAACAGUAGCCUCAGUGUCACA
..........((((((..(((((..(((((((....))))..(((((......(((....)))...))))).....)))...)))))..))))))... (-22.80 = -22.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:49 2006