Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,456,882 – 15,456,979 |
Length | 97 |
Max. P | 0.988899 |
Location | 15,456,882 – 15,456,979 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 90.08 |
Mean single sequence MFE | -38.16 |
Consensus MFE | -32.22 |
Energy contribution | -32.86 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.04 |
Mean z-score | -2.17 |
Structure conservation index | 0.84 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15456882 97 + 22407834 UGACUCGAUUUAGAGGUCCGCUUGGGGCGGCAAGUGAUUUGAUUGC-UGGCCAUUGCCCGGGGUCGGGUUGCGGAUAGGAUUCGGGUUGGGAUU------GAGU .(((((((.((....((((((...((.((((((.........))))-)).))...(((((....))))).))))))..)).)))))))......------.... ( -38.30) >DroSec_CAF1 194967 97 + 1 UGACUCGAUUUAGAGGUCCGCUUGGGGCGGCAAGUGAUUUGAUUGC-UGGCCAUUGCCCGGGGUCGGGUGGCGGAUAGGAUUCGGGUUGGGAUU------GAGU .(((((((.((....(((((((..((.((((((.........))))-)).))...(((((....))))))))))))..)).)))))))......------.... ( -39.60) >DroSim_CAF1 200925 97 + 1 UGACUCGAUUUAGAGGUCCGCUUGGGGCGGCAAGUGAUUUGAUUGC-UGGCCAUUGCCCGGGGUCGGGUGGCGGAUAGGAUUCGGGUUGGGAUU------GAGU .(((((((.((....(((((((..((.((((((.........))))-)).))...(((((....))))))))))))..)).)))))))......------.... ( -39.60) >DroYak_CAF1 202616 92 + 1 UGACUCGAUUUAGAGGUCCGCUUGGGGCGGCAAGUGAUUUGAUUGC-UGGCCAUUGCCCGGGGUCGGGUGCCGGAUAGGAUUCGGGUUGGGGU----------- .(((((((.((....((((((...((.((((((.........))))-)).))...(((((....)))))).)))))..)).))))))).....----------- ( -35.10) >DroAna_CAF1 204331 104 + 1 UGACUCGUUUUAGCGCUCAGCUUGGGGCGGCAAGUGAUUUGAUUGCCCGGCCAUUGCCCGGGGACGGGUUGCGGAUCGGAUUCGGGUUGGGAUUCGGACUGGAC ...((.((((.....(((((((((((((((((((...)))).))))))((((...(((((....)))))...)).)).....)))))))))....)))).)).. ( -38.20) >consensus UGACUCGAUUUAGAGGUCCGCUUGGGGCGGCAAGUGAUUUGAUUGC_UGGCCAUUGCCCGGGGUCGGGUGGCGGAUAGGAUUCGGGUUGGGAUU______GAGU .(((((((.((....((((((...((.((((((.........)))).)).))...(((((....))))).))))))..)).)))))))................ (-32.22 = -32.86 + 0.64)
Location | 15,456,882 – 15,456,979 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 90.08 |
Mean single sequence MFE | -20.68 |
Consensus MFE | -17.48 |
Energy contribution | -18.08 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.31 |
Structure conservation index | 0.85 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561820 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15456882 97 - 22407834 ACUC------AAUCCCAACCCGAAUCCUAUCCGCAACCCGACCCCGGGCAAUGGCCA-GCAAUCAAAUCACUUGCCGCCCCAAGCGGACCUCUAAAUCGAGUCA ((((------..((.......))......(((((..((((....))))....(((..-((((.........)))).)))....)))))..........)))).. ( -22.20) >DroSec_CAF1 194967 97 - 1 ACUC------AAUCCCAACCCGAAUCCUAUCCGCCACCCGACCCCGGGCAAUGGCCA-GCAAUCAAAUCACUUGCCGCCCCAAGCGGACCUCUAAAUCGAGUCA ((((------..((.......))......(((((..((((....))))....(((..-((((.........)))).)))....)))))..........)))).. ( -21.30) >DroSim_CAF1 200925 97 - 1 ACUC------AAUCCCAACCCGAAUCCUAUCCGCCACCCGACCCCGGGCAAUGGCCA-GCAAUCAAAUCACUUGCCGCCCCAAGCGGACCUCUAAAUCGAGUCA ((((------..((.......))......(((((..((((....))))....(((..-((((.........)))).)))....)))))..........)))).. ( -21.30) >DroYak_CAF1 202616 92 - 1 -----------ACCCCAACCCGAAUCCUAUCCGGCACCCGACCCCGGGCAAUGGCCA-GCAAUCAAAUCACUUGCCGCCCCAAGCGGACCUCUAAAUCGAGUCA -----------......((.(((.........(((.((((....)))).....))).-................((((.....)))).........))).)).. ( -19.10) >DroAna_CAF1 204331 104 - 1 GUCCAGUCCGAAUCCCAACCCGAAUCCGAUCCGCAACCCGUCCCCGGGCAAUGGCCGGGCAAUCAAAUCACUUGCCGCCCCAAGCUGAGCGCUAAAACGAGUCA (..((((.......(((...((....))........((((....))))...)))..((((...(((.....)))..))))...))))..).............. ( -19.50) >consensus ACUC______AAUCCCAACCCGAAUCCUAUCCGCCACCCGACCCCGGGCAAUGGCCA_GCAAUCAAAUCACUUGCCGCCCCAAGCGGACCUCUAAAUCGAGUCA .....................((......(((((..((((....))))....(((...((((.........)))).)))....))))).(((......))))). (-17.48 = -18.08 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:48 2006