Locus 5422

Sequence ID 2L_DroMel_CAF1
Location 15,456,448 – 15,456,541
Length 93
Max. P 0.654282
window8608

overview

Window 8

Location 15,456,448 – 15,456,541
Length 93
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 77.02
Mean single sequence MFE -28.92
Consensus MFE -16.86
Energy contribution -17.19
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.58
SVM decision value 0.25
SVM RNA-class probability 0.654282
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15456448 93 - 22407834
GGCAGUUAAUUUGAUUAUGUAUUUUCCGCUGGGCCGCAUUGAUUAACUGCCGUCUGACAUGACAGCUCAAUUCGG-G--------------------CCCGCCGAUGUCAUGAU
(((((((((((.....((((.....((....))..)))).)))))))))))......(((((((.......((((-.--------------------....))))))))))).. ( -28.81)
>DroVir_CAF1 229299 99 - 1
GGCAGUUAAUUUGAUUAUGUU---------UGGCUGCAUUGAUUAACUGCCGCCUGACAUGACAGCUCAAUUCC-AAUCC-----CUACACCCACCCCCUGCAGGGUCCAUGAU
(((((((((((.....((((.---------.....)))).)))))))))))((.((......))))........-.....-----...((...((((......))))...)).. ( -23.10)
>DroEre_CAF1 204863 99 - 1
GGCAGUUAAUUUGAUUAUGUAUUUUCCGCUGGGCCGCAUUGAUUAACUGCCGUCUGACAUGACAGCUCAAUUCGG-G-------------CCCGGG-CCCGCCGAUGUCAUGAU
(((((((((((.....((((.....((....))..)))).)))))))))))......(((((((........(((-(-------------(....)-))))....))))))).. ( -35.90)
>DroYak_CAF1 202162 93 - 1
GGCAGUUAAUUUGAUUAUGUAUUUUCCACUGGGCCGCAUUGAUUAACUGCCGUCUGACAUGACAGCUCAAUUCGG-G--------------------CCCGUCGAUGUCAUGAU
(((((((((((.....((((....(((...)))..)))).)))))))))))((((((((((((.((((.....))-)--------------------)..))).)))))).))) ( -32.60)
>DroMoj_CAF1 240607 101 - 1
GGCAGUUAAUUUGAUUAUGUUU--------UGGCUGCAUUGAUUAACUGCCGCCUGACAUGACAGCUCAAUUCCGAAUCC-----CUACACCCACCCCCUGCAGGGUCCAUGAU
(((((((((((.....((((..--------.....)))).)))))))))))......((((.....((......))....-----........((((......)))).)))).. ( -23.80)
>DroAna_CAF1 203979 112 - 1
GGCAGUUAAUUUGAUUAUGUAUUUUCCGCUGGGCCGCAUUGAUUAACUGCCGUCUGACAUGACAGCUCAAUUCGG-CUGGCGAUUGUGCACCUCCC-CCCGUCGAUAUCAUGAU
(((((((((((.....((((.....((....))..)))).)))))))))))......((((((((((......))-)))(((....))).......-..........))))).. ( -29.30)
>consensus
GGCAGUUAAUUUGAUUAUGUAUUUUCCGCUGGGCCGCAUUGAUUAACUGCCGUCUGACAUGACAGCUCAAUUCGG_G_____________CCC_CC_CCCGCCGAUGUCAUGAU
(((((((((((.....((((...............)))).)))))))))))(((......)))................................................... (-16.86 = -17.19 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:46 2006