Locus 5421

Sequence ID 2L_DroMel_CAF1
Location 15,455,093 – 15,455,187
Length 94
Max. P 0.846843
window8607

overview

Window 7

Location 15,455,093 – 15,455,187
Length 94
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 87.37
Mean single sequence MFE -26.38
Consensus MFE -18.74
Energy contribution -18.38
Covariance contribution -0.36
Combinations/Pair 1.18
Mean z-score -2.31
Structure conservation index 0.71
SVM decision value 0.77
SVM RNA-class probability 0.846843
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15455093 94 + 22407834
UUCAUGUGU--UUCCUUCUUCGAAGGAUCAAAACUUUUUCCCGAGUGUGAGUCCUCCGUCCGACAUUGCCUCGAACUUGGAUUUCCACUUGGCCGU
......((.--.((((((...)))))).))..........(((((((..(((((...((.(((.......))).))..)))))..))))))).... ( -26.30)
>DroSec_CAF1 193157 96 + 1
UUCAUUUGUUGUUCCUUUUUCGAAGGACCAAAACUUUUCCCCGAGUGUGAGUCCUCCGUCCGACAUUGCCUCGAACUUGGAUUUCCACUUGGCCGU
........(((.((((((...)))))).))).........(((((((..(((((...((.(((.......))).))..)))))..))))))).... ( -26.50)
>DroSim_CAF1 199097 96 + 1
UUCAUUUGUUGUUCCUUUUUCGAAGGACCAAAACUUUUUCCCGAGUGUGAGUCCUCCGUCCGACAUUGCCUCGAACUUGGAUUUCCACUUGGCCGU
........(((.((((((...)))))).))).........(((((((..(((((...((.(((.......))).))..)))))..))))))).... ( -26.50)
>DroEre_CAF1 203494 87 + 1
---ACUAGU--UUUCUUUUUCGGAGGAUCGCAACUUUUCCCCGAGUGUGAGUCCUC----CGACAUUGGCUCGAACUUGGAUCUCCACUUGGCCGU
---......--........(((((((((((((.(((......)))))))).)))))----)))....(((.(((...(((....))).)))))).. ( -29.10)
>DroYak_CAF1 200774 90 + 1
UUCAUUUGU--UUGCCUUUUCGGAGGAUCGGAACUUUUUCCCGAGUGUGAGUCCUC----CGACAUUGCCUCGAACUUGGAUCUCCACUUGGUCGU
....((((.--..((..(.(((((((((....((((......))))....))))))----))).)..))..))))....((((.......)))).. ( -23.50)
>consensus
UUCAUUUGU__UUCCUUUUUCGAAGGAUCAAAACUUUUUCCCGAGUGUGAGUCCUCCGUCCGACAUUGCCUCGAACUUGGAUUUCCACUUGGCCGU
............((((((...)))))).............(((((((.((((((......(((.......))).....))).)))))))))).... (-18.74 = -18.38 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:45 2006