Locus 5417

Sequence ID 2L_DroMel_CAF1
Location 15,451,568 – 15,451,663
Length 95
Max. P 0.573078
window8598

overview

Window 8

Location 15,451,568 – 15,451,663
Length 95
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.52
Mean single sequence MFE -29.68
Consensus MFE -18.34
Energy contribution -18.82
Covariance contribution 0.47
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.62
SVM decision value 0.08
SVM RNA-class probability 0.573078
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15451568 95 + 22407834
---------------AAUAGCCCACUGC---CAAACAAUUUAAGCCACCCACUCGAAGCGAAGGACGUGGCAGUUGCAACUGCGGCGCCAGGGGCCAGAUUAUAACGAUCUCU-------
---------------....((((.(((.---(...........(((((((..(((...))).))..))))).(((((....)))))).))))))).(((((.....)))))..------- ( -28.60)
>DroPse_CAF1 186560 90 + 1
----------------AUACCCA---GC---CA--------CAGCCACCCACUCGCCGUGAAGGACGUGGCAGUUGCAACUGCGGCGCCAGCGGCCAGUUUAUAACGAUCUCUGGUGCCC
----------------.......---((---((--------(..((...(((.....)))..))..)))))....((....))((((((((.(..(.((.....)))..).)))))))). ( -31.10)
>DroEre_CAF1 199961 95 + 1
---------------AAUAGCCCGCCGC---CAAACAAUUUAAGCCACCCACUCGAAGCGAAGGACGUGGCAGUUGCAACUGCGGCGCCAGGGGCCAGAUUAUAACGAUCUCU-------
---------------....(((((((((---....(((((...(((((((..(((...))).))..)))))))))).....))))).....)))).(((((.....)))))..------- ( -27.00)
>DroYak_CAF1 197240 95 + 1
---------------AAUAGACCCCUGC---CAAACAAUGUAAGCCACCCACUUGAAACGAAGGACGUGGCAGUUGCAACUGCGGCGCCAGGGGCCAGAUUAUAACGAUCUCU-------
---------------....(.((((((.---(...........(((((...(((......)))...))))).(((((....)))))).)))))).)(((((.....)))))..------- ( -30.30)
>DroAna_CAF1 199278 113 + 1
AAAACUAGAAAUAAAAACAGCCCGCCGCCGUCUAACAAUUUAAGCCACCCACUCGAAUCGAAGGACGUGGCAGUUGCAAAUGCGGCGCCAGGGGCCAGAUUAUAACGAUCUCU-------
...................(((((((((.((((..(.(((..((.......))..))).)..))))))))).(((((....))))).....)))).(((((.....)))))..------- ( -30.00)
>DroPer_CAF1 187632 90 + 1
----------------AUACCCA---GC---CA--------CAGCCACCCACUCGCCGUGAAGGACGUGGCAGUUGCAACUGCGGCGCCAGCGGCCAGUUUAUAACGAUCUCUGGUGCCC
----------------.......---((---((--------(..((...(((.....)))..))..)))))....((....))((((((((.(..(.((.....)))..).)))))))). ( -31.10)
>consensus
_______________AAUAGCCC_C_GC___CAAACAAUUUAAGCCACCCACUCGAAGCGAAGGACGUGGCAGUUGCAACUGCGGCGCCAGGGGCCAGAUUAUAACGAUCUCU_______
...................((((...((...............(((((((..(((...))).))..))))).(((((....)))))))...))))......................... (-18.34 = -18.82 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:37 2006