Locus 5414

Sequence ID 2L_DroMel_CAF1
Location 15,436,772 – 15,436,871
Length 99
Max. P 0.679773
window8591

overview

Window 1

Location 15,436,772 – 15,436,871
Length 99
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 73.65
Mean single sequence MFE -37.47
Consensus MFE -18.12
Energy contribution -19.19
Covariance contribution 1.06
Combinations/Pair 1.40
Mean z-score -1.77
Structure conservation index 0.48
SVM decision value 0.30
SVM RNA-class probability 0.679773
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15436772 99 + 22407834
GCCAGGCUCUGGCUCUGACUCU--GGCUCUCCAGUGAACC-UGAGCUUGAGUCUCGGCCAUAGACUUUGACUGUGACUGAGCCUCCAUUC--CAGGGUCAGGUU
(((((...)))))(((((((((--(((((....(....).-.))))..(((.(((((.(((((.......))))).))))).))).....--)))))))))).. ( -40.60)
>DroSec_CAF1 182447 99 + 1
GCCAGGCUCUGGAUCUGGCUCU--GGCUCUCCAGUGAACC-UGAGCUUGAGUCUCGGCCAUAGACUUUGACUGUGACUGAGCCUCGCUUC--CAGGGUCAGGUU
(((.(((((((((...(((((.--((.((......)).))-.))))).(((.(((((.(((((.......))))).))))).)))...))--))))))).))). ( -43.30)
>DroSim_CAF1 188350 99 + 1
GCCAGGCUCUAGCUGUGGCUCU--GGCUCUCCAGUGAACC-UGAGCUUGAGUCUCGGCCAUAGACUUUGACUGUGACUGAGCCUCGCUUC--CAGGGUCAGGUU
(((.(((((((((...(((((.--((.((......)).))-.))))).(((.(((((.(((((.......))))).))))).))))))..--.)))))).))). ( -38.00)
>DroEre_CAF1 189264 85 + 1
GGC--------------GCUCU--GGCUCUCCAGUGAACC-UGAGCUUGGGGCUCGGCCAUAGACUUUGACUGCGACUGAGCCUCGAUUC--CAGGGUCAGGUU
...--------------.(.((--((....)))).)((((-(((.((((((((((((.(.(((.......))).).)))))))......)--)))).))))))) ( -33.10)
>DroYak_CAF1 189983 93 + 1
GCCAGC--------CAGGCUCU--GGCUCUCCAGAGAACC-UGAGCUUGAGUCUUGGCCACAGACGGUGACUGUGACUGAGCCUCGAUUCCCCAGGGUCAGGUU
((((((--------(((((((.--((.(((....))).))-.))))))).))..))))(((((.......))))).((((.(((.(.....).))).))))... ( -37.10)
>DroPer_CAF1 182000 92 + 1
--------UGGGCCCCAACAACGAAGCGAAACUGUGAACCCUGAGCUGGAGCUGGAGCUGGAGCUGGAGCCUGU-AUUGGGCCC-CAUUC--CAGGGUCAGGCC
--------..((((...........(((....)))((.(((((((((..(((....)))..))))((.((((..-...)))).)-)....--))))))).)))) ( -32.70)
>consensus
GCCAGG__CUGGCUCUGGCUCU__GGCUCUCCAGUGAACC_UGAGCUUGAGUCUCGGCCAUAGACUUUGACUGUGACUGAGCCUCGAUUC__CAGGGUCAGGUU
................((((((..(((((.............)))))((((.(((((.(((((.......))))).))))).)))).......))))))..... (-18.12 = -19.19 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:31 2006