Locus 5411

Sequence ID 2L_DroMel_CAF1
Location 15,426,047 – 15,426,145
Length 98
Max. P 0.770444
window8586

overview

Window 6

Location 15,426,047 – 15,426,145
Length 98
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 95.53
Mean single sequence MFE -18.42
Consensus MFE -14.85
Energy contribution -14.85
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.62
Structure conservation index 0.81
SVM decision value 0.53
SVM RNA-class probability 0.770444
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15426047 98 - 22407834
GGGAAUAUAUAAAAAAAAAGAAAAACAUGCGAAAGCUGUCAACUAAAUUGAUGCACCCUCAAGCAUUCGAUUACAAAAGCAGUGAGCCCACAAAAACA
(((..(((................(((.((....)))))......(((((((((........))).)))))).........)))..)))......... ( -17.70)
>DroSec_CAF1 171818 96 - 1
GGGAAUA--UAAAAAAAGAGAAAAACAUGCGAAAGCUGUCAGCUAAAUUGAUGCACCCUCAAGCAUUCGAUUACAAAAGCAGUGAGCCCACAAAAACA
(((..((--(..............(((.((....)))))..(((.(((((((((........))).)))))).....))).)))..)))......... ( -19.20)
>DroSim_CAF1 177321 96 - 1
GGGAAUA--UAAAAAAAGAGAAAAACAUGCGAAAGCUGUCAGCUAAAUUGAUGCACCCUCAAGCAUUGGAUUACAAAAGCAGUGAGCCCACAAAAACA
(((..((--(..............(((.((....)))))..(((((.(..((((........))))..).)).....))).)))..)))......... ( -18.40)
>DroYak_CAF1 179289 94 - 1
GGGAAUA--UAAAA--AAAAAAAAACAUGCGAAAGCUGUCAGCUAAAUUGAUGCACCCUCAAGCAUUGGAUUACAAAAGCAGUGAGCCCACAAAAACA
(((..((--(....--........(((.((....)))))..(((((.(..((((........))))..).)).....))).)))..)))......... ( -18.40)
>consensus
GGGAAUA__UAAAAAAAAAGAAAAACAUGCGAAAGCUGUCAGCUAAAUUGAUGCACCCUCAAGCAUUCGAUUACAAAAGCAGUGAGCCCACAAAAACA
(((.....................(((.((....)))))........(..((((........))))..).((((.......)))).)))......... (-14.85 = -14.85 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:26 2006