Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,423,877 – 15,423,993 |
Length | 116 |
Max. P | 0.585762 |
Location | 15,423,877 – 15,423,993 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.04 |
Mean single sequence MFE | -35.40 |
Consensus MFE | -22.20 |
Energy contribution | -22.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.21 |
Structure conservation index | 0.63 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15423877 116 + 22407834 UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GGCAGC--GAGUAUCUGCGGAUCGGGGCAUCCAAC-UUCAAA .....(((((...((((((((...(.((((.((((((.((.....)).)))))).(((((((((.....))))))))-)...))--)).)...))))).))).))))).....-...... ( -42.90) >DroSec_CAF1 169567 110 + 1 UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GGCAGC--GAGUAUCUGCGUAUCGGGGCAUCCAAC------- .....(((((...(((..((.((((.((((.((((((.((.....)).)))))).(((((((((.....))))))))-)...))--))...)))).)).))).))))).....------- ( -38.20) >DroSim_CAF1 175064 110 + 1 UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GGCAGC--GAGUAUCUGCGGAUCGGGGCAUCCAAC------- .....(((((...((((((((...(.((((.((((((.((.....)).)))))).(((((((((.....))))))))-)...))--)).)...))))).))).))))).....------- ( -42.90) >DroEre_CAF1 176598 106 + 1 UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGCCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GGC---------AAC----CAUCCAACCAUCCAAACAGCCGA .............((((.((((....(((.....))).))))....((((......((((((((.....))))))))-)))---------)..----..................)))). ( -30.20) >DroYak_CAF1 177019 109 + 1 UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGCCAUUAAUUUGCCGCCGUCAAGGUGGCAA-GU----------AUCUGGGGAUUGGGGCAUCCAACCAUCCGA .............(((.....((((...((((......))))............((((((((((.....))))))))-))----------.)))).((.((((.....))))))..))). ( -32.90) >DroAna_CAF1 177883 105 + 1 UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAUUUGCUGCAAGAGUAUCUGAG--------UUUCUAAG------- .....(((((....)).))).((((.((((((......))))....((.((.(((..(((((((.....))))))).))).)))).))...))))..--------........------- ( -25.30) >consensus UCAAAGUGUCAAACGGCCGCACAGAGUCGCAUAAUGAAGUGCAAAAUGUCAUUAAUUUGCCGCCGUCAAGGUGGCAA_GGCAGC__GAGUAUCUGCGGAUCGGGGCAUCCAAC_______ ....((((.((...((((.....).)))((((......))))....)).))))....(((((((.....)))))))............................................ (-22.20 = -22.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:25 2006