Locus 5409

Sequence ID 2L_DroMel_CAF1
Location 15,418,011 – 15,418,106
Length 95
Max. P 0.978903
window8584

overview

Window 4

Location 15,418,011 – 15,418,106
Length 95
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 93.78
Mean single sequence MFE -30.28
Consensus MFE -26.99
Energy contribution -27.43
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.02
Structure conservation index 0.89
SVM decision value 1.82
SVM RNA-class probability 0.978903
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15418011 95 - 22407834
ACU-UGCUUCCGAUUUCGGCUUGGGCAAGCGGUAGCUUUUUGGUCUAUUAGGAAACCACGCCAUAGAGCUGCCACUUGAAAGUCAUAUUGCAUUUG
...-(((....(....)(((((...((((.(((((((((.((((......(....)...)))).))))))))).)))).))))).....))).... ( -32.10)
>DroSec_CAF1 163784 95 - 1
ACU-UGCUUCCGAGUUCGGCUGGGGCAAGCGGUAGCUUUUUGGUCUAUUAGGAAACCACGCCAUAGAGCUGCCACUUGAAAGUCAUAUUGCAUUUG
...-(((.(((.((.....)).)))((((.(((((((((.((((......(....)...)))).))))))))).))))...........))).... ( -31.80)
>DroSim_CAF1 168835 95 - 1
ACU-UGCUUCCGAGUUCGGCUGGAGCAAGCGGUAGCUUUUUGGUCUAUUAGGAAACCACGCCAUAGAGCUGCCACUUGAAAGUCAUAUUGCAUUUG
(((-((....)))))..((((....((((.(((((((((.((((......(....)...)))).))))))))).))))..))))............ ( -31.70)
>DroEre_CAF1 170689 95 - 1
ACU-UGCUUCCGAGUUCGACUGGGACAAGCGGUAGCUUUUUGGUCUAUUAGGAAACCACGCCAUAGAGCUGCCACUUGAAAGUCAUAUUGCAUUUG
...-(((.(((.((.....)).)))((((.(((((((((.((((......(....)...)))).))))))))).))))...........))).... ( -32.70)
>DroYak_CAF1 171001 95 - 1
ACU-UGCUUCCGAGUUCGGCUGGGGCAAGCGGUAGCUAUUUGGUCUAUUAGGAAACCACGCCAUAGAGCUGCCACUUGAAAGUCAUAUUGCAUUUG
...-(((.(((.((.....)).)))((((.(((((((...((((......(....)...))))...))))))).))))...........))).... ( -29.80)
>DroAna_CAF1 171595 95 - 1
AAUCCGCUUCCGACUGCGACCUGGCCAAGCGGUAGCUUU-UCGUCUAUUAGGAAACCACGCCACAGAGCCGCCACUUGAAAGUCAUAUUGCAUUUG
..........(((.(((((..((((((((.((..(((((-..((......(....)......)))))))..)).))))...))))..))))).))) ( -23.60)
>consensus
ACU_UGCUUCCGAGUUCGGCUGGGGCAAGCGGUAGCUUUUUGGUCUAUUAGGAAACCACGCCAUAGAGCUGCCACUUGAAAGUCAUAUUGCAUUUG
.....((....(....)((((....((((.(((((((((.((((......(....)...)))).))))))))).))))..)))).....))..... (-26.99 = -27.43 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:24 2006