Locus 5408

Sequence ID 2L_DroMel_CAF1
Location 15,417,222 – 15,417,322
Length 100
Max. P 0.655628
window8583

overview

Window 3

Location 15,417,222 – 15,417,322
Length 100
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 81.14
Mean single sequence MFE -30.34
Consensus MFE -17.18
Energy contribution -16.19
Covariance contribution -0.98
Combinations/Pair 1.22
Mean z-score -2.15
Structure conservation index 0.57
SVM decision value 0.26
SVM RNA-class probability 0.655628
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15417222 100 - 22407834
CUGUACGUGUUGUUUGUUUAACG------------CGCCGAGUGUAAAUUAAUAUUUAAUUAUGAUUGUUCUCAGCUCGGGCCGCU-----GAUCGUGUGUUGAGUA-AACGCCA-UUU
......(((.(((((((((((((------------(((.((((((......))))))..............(((((.......)))-----))..))))))))))))-)))).))-).. ( -24.70)
>DroPse_CAF1 160310 117 - 1
CUGUACGUGUUGUUUGCUUAACGCUUAACGCUUAACGCCGAGUGUAAAUUAAUAUUUAAUUAUGGCUGUUCUCGGCUCCGGCCGCCACCGCGAUCGUGUGUUGAGUA-AACGCCA-UUU
......(((.((((((((((((((............((((((.((.(((((.....)))))...))....))))))..((..(((....)))..)).))))))))))-)))).))-).. ( -36.80)
>DroWil_CAF1 284911 86 - 1
UUGGACGUGUUGUUUGCUUAACG------------CUCUGGGUGUAAAUUAAUAUUUAAUUAUGAUCGUUUC---------------------UCGUGUGUUGAGCAAAACGCCAAUUU
((((.(((....(((((((((((------------(.(.(((.........(((......)))........)---------------------))).)))))))))))))))))))... ( -22.83)
>DroYak_CAF1 170216 100 - 1
CUGUACGUGUUGUUUGCUUAACG------------CGCCGAGUGUAAAUUAAUAUUUAAUUAUGAUUGUUCUCAGCUCGGGCCGCU-----AAUCGUGUGUUGAGUA-AGCGCCA-UUU
......(((.(((((((((((((------------(.((((((.(((((....)))))....(((......)))))))))))(((.-----....))).))))))))-)))).))-).. ( -28.90)
>DroAna_CAF1 170631 103 - 1
CUGUACGUGUUGUUUGCUUAACG------------CGCCGAGUGUAAAUUAAUAUUUAAUUAUGAUUGUUCCCAGCUCGAGCCGCUGCC--GAUCGUGUGUUGAGUA-AACGCCA-UUU
......(((.(((((((((((((------------(((.((((((......))))))......(((((....((((.......)))).)--))))))))))))))))-)))).))-).. ( -32.00)
>DroPer_CAF1 160840 110 - 1
CUGUACGUGUUGUUUGCUUAACG-------CUUAACGCCGAGUGUAAAUUAAUAUUUAAUUAUGGCUGUUCUCGGCUCCGGCCGCCACCGCGAUCGUGUGUUGAGUA-AACGCCA-UUU
......(((.(((((((((((((-------(.....((((((.((.(((((.....)))))...))....))))))..((..(((....)))..)).))))))))))-)))).))-).. ( -36.80)
>consensus
CUGUACGUGUUGUUUGCUUAACG____________CGCCGAGUGUAAAUUAAUAUUUAAUUAUGAUUGUUCUCAGCUCGGGCCGCU_____GAUCGUGUGUUGAGUA_AACGCCA_UUU
......(((((...((((((((.................((((((......))))))...(((((........(((.......))).......))))).)))))))).)))))...... (-17.18 = -16.19 +  -0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:23 2006