Locus 5406

Sequence ID 2L_DroMel_CAF1
Location 15,412,685 – 15,412,787
Length 102
Max. P 0.540611
window8580

overview

Window 0

Location 15,412,685 – 15,412,787
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 84.13
Mean single sequence MFE -26.30
Consensus MFE -19.38
Energy contribution -19.27
Covariance contribution -0.11
Combinations/Pair 1.20
Mean z-score -1.78
Structure conservation index 0.74
SVM decision value 0.01
SVM RNA-class probability 0.540611
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15412685 102 - 22407834
GCGUGGGCCGUGCAGUUUGAACUAGCCAAAUCUUGGCUAAUUAAUCAAAAUAAUAAUCAAGCAAUCAGUGGAU-----------CAUAUGGCCAGACAUCAGAC-------ACCAGCACA
((((((((((((..((((((..((((((.....))))))((((.......))))..)))))).(((....)))-----------..))))))).(....)...)-------))..))... ( -24.50)
>DroPse_CAF1 156937 113 - 1
GCGUGGGCCGUGCAGCUUGAACUAGCCAAAUCUUGGCUAAUUAAUCAAAAUAAUAAUCAAGCAAUCAGUGGAGUGGAUCCACUACAUAUGGCCAGACACUAGAC-------ACCAGCACA
((((((((((((..((((((..((((((.....))))))((((.......))))..))))))....((((((.....))))))...)))))))...(....).)-------))..))... ( -34.90)
>DroGri_CAF1 166630 102 - 1
GCGUGGGCCGUACAGUUUGAACUAGCCAAAUCUAAGCUAAUUAAUCAAAAUAAUAAUCAAGCAAUCAGUGGAU-----------CAUACGCUAUAGAGUCAGAC-------ACCAGCACA
((.(((.(.(.((.((((((..((((.........))))((((.......))))..))))))....((((...-----------....)))).....))).)..-------.)))))... ( -15.40)
>DroYak_CAF1 165630 109 - 1
GCGUGGGCCGUGCAGUUUGAACUAGCCAAAUCUUGGCUAAUUAAUCAAAAUAAUAAUCAAGCAAUCAGUGGAU-----------CAUAUGGCCAGACAUCAGACACCAGACACCAGCACA
((((((((((((..((((((..((((((.....))))))((((.......))))..)))))).(((....)))-----------..))))))).....((........)))))..))... ( -24.70)
>DroAna_CAF1 165800 95 - 1
GCGUGGGCCGUGCAGUUUGAACUAGCCAAAUCUUGGCUAAUUAAUCAAAAUAAUAAUCAAGCAAUCAGUGGAU-----------CAUAUGGCCAGA-------C-------ACUGCCACA
((((((((((((..((((((..((((((.....))))))((((.......))))..)))))).(((....)))-----------..)))))))...-------)-------)).)).... ( -24.50)
>DroPer_CAF1 157442 113 - 1
GCGUGGGCCGUGCAGCUUGAACUAGCCAAAUCUUGGCUAAUUAAUCAAAAUAAUAAUCAAGCAAUCAGUGGAGUGGAUCCACUACAUGUGGCCAGACACUAGAC-------ACCAGCACA
((....)).((((.((((((..((((((.....))))))((((.......))))..)))))).....(((.((((..(((((.....))))..)..))))...)-------))..)))). ( -33.80)
>consensus
GCGUGGGCCGUGCAGUUUGAACUAGCCAAAUCUUGGCUAAUUAAUCAAAAUAAUAAUCAAGCAAUCAGUGGAU___________CAUAUGGCCAGACAUCAGAC_______ACCAGCACA
.....(((((((..((((((..((((((.....))))))((((.......))))..))))))..((....))..............)))))))........................... (-19.38 = -19.27 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:20 2006