Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,411,549 – 15,411,651 |
Length | 102 |
Max. P | 0.993337 |
Location | 15,411,549 – 15,411,651 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 89.02 |
Mean single sequence MFE | -19.80 |
Consensus MFE | -18.04 |
Energy contribution | -17.88 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.02 |
Structure conservation index | 0.91 |
SVM decision value | 2.39 |
SVM RNA-class probability | 0.993337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15411549 102 + 22407834 CAAUAAAAUAAAUAGCCCUAACUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGUCUAGACAAAUGACUCGGGUUAUUUGUCAGCAAUUGAACACAUCA ((((...(((((((((((.........((((((..(((....)))..))))))(.((((.........)))))))))))))))).....))))......... ( -19.70) >DroSec_CAF1 157387 102 + 1 CAAUAAAGUAAAUAGCCCUAAUUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAUCA ((((((.(((...((...(((((((.....))))))).))...))).))))))...((...((((((((((....)))))))))).)).............. ( -18.60) >DroSim_CAF1 162339 102 + 1 CAAUAAAGUAAAUAGCCCUAAUUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAUCA ((((((.(((...((...(((((((.....))))))).))...))).))))))...((...((((((((((....)))))))))).)).............. ( -18.60) >DroEre_CAF1 164094 102 + 1 CAAUAAAAUAAAUAGCCCUAGUUUGAACAAUAACUUAUCUUGAUGUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAUCA ....................(((..(.((((((..(((....)))..))))))...((...((((((((((....)))))))))).))..)..)))...... ( -21.20) >DroYak_CAF1 164523 90 + 1 ----------AAUAGCACUG--UUAAACAAUAACUUAUCGUGAUAUAUUAUUGGCAGCCCGGACAAAUGACUUGAGUUAUUUGUCAGCAAUUGAACACAUGG ----------....((.(((--(....((((((..(((....)))..))))))))))....((((((((((....)))))))))).)).............. ( -20.90) >consensus CAAUAAAAUAAAUAGCCCUAAUUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAUCA ..............((...........((((((..(((....)))..))))))........((((((((((....)))))))))).)).............. (-18.04 = -17.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:19 2006