| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,408,453 – 15,408,558 |
| Length | 105 |
| Max. P | 0.860074 |
| Location | 15,408,453 – 15,408,558 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.15 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -17.61 |
| Energy contribution | -17.25 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.860074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15408453 105 + 22407834 GCACGCGCUAUACUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCAUAAUUGGUCAUGGC--CAGUCCGCCGGCACGGUGAGCGGUACUU ((.(((((((((((((((((((....)))))))))))..)))))......(((((..(((((.......))))).))--)))..(((((...))))).))))).... ( -37.00) >DroVir_CAF1 179819 95 + 1 GCUCGCGCUGUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCGUAAUUGUGCACCA---CAACGAACAUUCAA-----GUGUU---- ....(((((....((((((((((.....(((((((((..(....)..)))))))))..))))))..(((((...))---)))))))......)-----)))).---- ( -25.20) >DroGri_CAF1 162380 95 + 1 GCACGCACUGUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCGUAAUUGCGCCGUC---CAACAAGCAUCCAA-----GUGGU---- .....((((....(((((((((....)))))))))...(((.(((((...((((...(((((((....))))))))---)))))))))))..)-----)))..---- ( -30.80) >DroYak_CAF1 161469 105 + 1 ACACGCGCUAUAAUUUGACGCUAAUGAGUGUCGAAGUUGAUAGUUUGAUUUUGGCAAAUGGCCUAAUUGGUCAUGGC--UUACCCGCCGGUACGGUAAGCGGUACUU ...((.(((((..(((((((((....)))))))))....))))).)).....(((..((((((.....))))))((.--....)))))(((((.(....).))))). ( -34.30) >DroMoj_CAF1 189200 97 + 1 GCACGCGCUGUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUAGCAAAUGGCGUAAUUGUGCACCGCGCCAACCAGCAUCCAA-----GUGU----- (((((((.((((.....((((((.....((..(((((..(....)..)))))..))..)))))).....)))).)))((......))......-----))))----- ( -27.60) >DroAna_CAF1 160798 104 + 1 GCACGCGCUAUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCAUAAUUGGUCAUGGC--CAGCCAGAAGGCGCUGUAAUAGG-AGUU (((.(((((....(((((((((....))))))))).............(((((((...((((.............))--)))))))))))))))))......-.... ( -32.32) >consensus GCACGCGCUAUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCGUAAUUGGGCAUGGC__CAACCAGCAGGCAA_____GUGGU____ ...((((((((..(((((((((....)))))))))....)))))..((((...((.....))..))))..............................)))...... (-17.61 = -17.25 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:18 2006