Locus 5403

Sequence ID	2L_DroMel_CAF1
Location	15,406,861 – 15,406,953
Length	92
Max. P	0.500000

overview

Window 7

Location	15,406,861 – 15,406,953
Length	92
Sequences	5
Columns	92
Reading direction	reverse
Mean pairwise identity	89.50
Mean single sequence MFE	-26.50
Consensus MFE	-19.96
Energy contribution	-20.20
Covariance contribution	0.24
Combinations/Pair	1.19
Mean z-score	-1.49
Structure conservation index	0.75
SVM decision value	-0.07
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15406861 92 - 22407834
GCGAUUAUCGGAGUGGCUGUUUUCCAUUUCCACCUUCUGGCCAAGAGAAUUGUCAAUUUAAAUUGCCCGGCGGGUGGAAAAGGUCUGCAAAA
((.(((.....))).))(((...((.(((((((((.((((.(((..((((.....))))...))).)))).))))))))).))...)))... ( -29.40)
>DroSec_CAF1 152578 91 - 1
GCGAUUAUCG-AUUGUCUAUUUUCCAUUUCCACCUUCUGGCGAAGAGAAUUGUCAAUUUUAGUUGCCCGGCGGGUGGAAAAGGUCUGCCAAA
(((((.....-...)))......((.(((((((((.(((((((..(((((.....)))))..))).)))).))))))))).))...)).... ( -28.00)
>DroSim_CAF1 157592 91 - 1
GCGAUUAUCG-AGUGGCUGUUUUCCAUUUCCACCUUUUGGCCAAGAGAAUUGUCAAUUUUAGUUGCCCGGCGGGUGGAAAAGGUCUGCCAAA
.((.....))-..((((.(....((.(((((((((.((((.(((.(((((.....)))))..))).)))).))))))))).)).).)))).. ( -29.00)
>DroEre_CAF1 159323 91 - 1
GCGAUUAUCG-AGUGGCUUUUUAGCAUUUCCACCUUCUGGCCAAGAGAAUUGUCAAUUUCAGUUGCCCGGCGGUUGGAAAAGCACUGGCAAA
........(.-(((((((....))).((((((.((.((((.(((..(((........)))..))).)))).)).))))))..)))).).... ( -24.20)
>DroYak_CAF1 159871 91 - 1
GCGAUUAUAG-AGUGCAUUUUUUCUAUUCCCACCUUCUGACCAAGAGAAUUAUCAAUUUUAGUUGCCCGGCGGGUGGAAAAGGUCUGCAAAA
((((((((((-((........))))))..((((((.(((..(((.(((((.....)))))..)))..))).))))))....)))).)).... ( -21.90)
>consensus
GCGAUUAUCG_AGUGGCUGUUUUCCAUUUCCACCUUCUGGCCAAGAGAAUUGUCAAUUUUAGUUGCCCGGCGGGUGGAAAAGGUCUGCCAAA
.......................((.(((((((((.((((.(((..(((........)))..))).)))).))))))))).))......... (-19.96 = -20.20 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:17 2006