Locus 5401

Sequence ID 2L_DroMel_CAF1
Location 15,399,188 – 15,399,283
Length 95
Max. P 0.500000
window8574

overview

Window 4

Location 15,399,188 – 15,399,283
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 76.84
Mean single sequence MFE -18.00
Consensus MFE -11.91
Energy contribution -11.60
Covariance contribution -0.31
Combinations/Pair 1.46
Mean z-score -1.39
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15399188 95 + 22407834
UUUUCAACCGAGUUUUUAAGAUCAUGCUUUCAAUUUAGGGAUGUAAUUCCUUUUUAAUACUUAGAUAGCGUGGUCUUAAAUUCAAAUGAAAUUUU
.(((((...(((((..((((((((((((.((.(((.(((((......)))))...))).....)).)))))))))))))))))...))))).... ( -25.00)
>DroEre_CAF1 151330 95 + 1
UUCUCAACAGAGUUUUUAAGAUCAUUGAUUCAAUUUUAGAAUGUAAUUUCUUUUUAAUACUUGGAUAGCAUGGCCCUAAAUUCAAAUAGAGCUUU
..(((....((((((....(..(((..((((((..((((((.(......).))))))...))))))...)))..)..)))))).....))).... ( -11.40)
>DroYak_CAF1 152013 94 + 1
UUCUCAACAGAGUUUUUAAGGUCAUGCAUUAUAUUUGAGGAAGUAAUUUCUUUUUAAUAAUUAGGUAGCGUAGCCUCAAGCUUU-AUGUAUGUUC
........(((((((...(((..(((((((((....((((((....))))))....)))))......))))..))).)))))))-.......... ( -17.60)
>consensus
UUCUCAACAGAGUUUUUAAGAUCAUGCAUUCAAUUUAAGGAUGUAAUUUCUUUUUAAUACUUAGAUAGCGUGGCCUUAAAUUCAAAUGAAACUUU
.........((((((...(((((((((.........(((((......)))))((((.....))))..))))))))).))))))............ (-11.91 = -11.60 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:14 2006