Locus 5400

Sequence ID 2L_DroMel_CAF1
Location 15,396,685 – 15,396,776
Length 91
Max. P 0.500000
window8573

overview

Window 3

Location 15,396,685 – 15,396,776
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 83.79
Mean single sequence MFE -21.78
Consensus MFE -13.29
Energy contribution -12.57
Covariance contribution -0.72
Combinations/Pair 1.21
Mean z-score -2.46
Structure conservation index 0.61
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15396685 91 + 22407834
UUUUUAUGCUUUUCAAUUUUC-CCAACUCAUUUUCCGCC----GAGCUGAUUGUUUUUUAAUGAAGCUUCG--GCGGGGAAUGUGUAACGAAAUUUGU
.............(((.((((-...((.((((..(((((----(((((.((((.....))))..))).)))--))))..)))).))...)))).))). ( -31.30)
>DroPse_CAF1 141658 87 + 1
---UUUUGUUUUUCAAUUUUC-UCGA-UCAUUUCCCUUU----GGGUUGAUUGCUUUUUAAUGAAGUUUCG--GUGGGGAAUGUGUAACGAAACUUGU
---(((((((...((...(((-((.(-((....(((...----)))..((..(((((.....))))).)))--)).)))))..)).)))))))..... ( -19.00)
>DroEre_CAF1 148803 91 + 1
UUUUUAUGCUUUUCAAUUUUC-CCAACUCAUUUUCCUUC----GAGUUGAUUGUUUUUUAAUGAAGCUUCG--GCGGGGAAUGUGUAACGAAAUUUGU
.............(((.((((-...((.((((..((.((----(((((.((((.....))))..))).)))--).))..)))).))...)))).))). ( -20.20)
>DroYak_CAF1 149509 91 + 1
UUUUUAUGCUAUUCAAUUUUC-CCAACUCAUUUUCCUGC----GAGUUGAUUGUUUUUUAAUGAAGCUUCG--GCGGGGAAUGGGUAACGAAAUUUGU
.............(((.((((-...(((((((..((.((----((.....))))...........((....--))))..)))))))...)))).))). ( -22.60)
>DroAna_CAF1 149408 97 + 1
-UUUUUUGUUUUUCAAUUUUCCCCAAAUCAUUUUCCCCCCAUUGACUUGAUUGUUUUUUAAUGAAGCUCCCGGUCGGGGAAUGUGUAACGAAAUUUGU
-..(((((((...((...(((((((((....))).........((((.(...(((((.....)))))..).))))))))))..)).)))))))..... ( -20.10)
>DroPer_CAF1 142007 85 + 1
-----UUGUUUUUCAAUUUUC-UCGA-UCAUUUCCCUUU----GGGUUGAUUGCUUUUUAAUGAAGUUUCG--GUGGGGAAUGUGUAACGAAACUUGU
-----(((((...((...(((-((.(-((....(((...----)))..((..(((((.....))))).)))--)).)))))..)).)))))....... ( -17.50)
>consensus
_UUUUAUGCUUUUCAAUUUUC_CCAACUCAUUUUCCUUC____GAGUUGAUUGUUUUUUAAUGAAGCUUCG__GCGGGGAAUGUGUAACGAAAUUUGU
.............(((.((((.......((((((((.......(((((.((((.....))))..)))))......))))))))......)))).))). (-13.29 = -12.57 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:13 2006