Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 216,319 – 216,427 |
Length | 108 |
Max. P | 0.558607 |
Location | 216,319 – 216,427 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 74.03 |
Mean single sequence MFE | -34.10 |
Consensus MFE | -16.23 |
Energy contribution | -16.62 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.27 |
Mean z-score | -1.73 |
Structure conservation index | 0.48 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 216319 108 - 22407834 UCUGGACAGUUCAGCAAGCCAGCUGUCCCCGCAAUGAAGACUCCUCCUCCCUCAAUGGGUGCACCAAUGGACCUUUCAUCAAGGUGUGUUC--UUUAAAAUAGGUCAUUA ...((((((((..(....).))))))))((....((((((........(((.....))).(((((.(((((...)))))...)))))..))--)))).....))...... ( -25.40) >DroVir_CAF1 11452 96 - 1 UCCGGACAGUUCAAUAAGCCCGCUGUGCCGGCACUGAAAACGCCGCCACCAUCAAUGGGUGCACCCAUGGAUCUGUCCUCCAGGUGUGUAA--------------UCCUU ...((((((.((............(((.((((.........)))).))).....(((((....))))).)).))))))...(((.......--------------.))). ( -28.80) >DroPse_CAF1 10221 102 - 1 UCCGGGCAAUUCAGCAAGCCCGCUGUGCCGGCAAUGAAGACGCCACCACCAUCCAUGGGGGCACCCAUGGAUCUGUCCUCAAGGUGAGGAU-----CGCACAG---AUUC ..(((((..........)))))((((((.(((.........)))......(((((((((....)))))))))..((((((.....))))))-----.))))))---.... ( -44.20) >DroGri_CAF1 9818 105 - 1 UCCGGCCAGUUCAAUAAGCCCGCUGUGCCAGCGCUAAAAACACCGCCACCCUCAAUGGGUGCACCCAUGGAUCUGUCUUCCAGGUGCGUCAAUUUG-----AGAUUGUUU ...(((((((...........)))).))).(((..........)))((..(((((..(..(((((..((((.......)))))))))..)...)))-----))..))... ( -30.30) >DroWil_CAF1 10302 110 - 1 UCUGGACAAUUUAGUAAACCAGCUGUGCCAGCUCUUAAAACACCGCCACCAUCAAUGGGUGCACCUAUGGAUCUGUCCUCAAGGUGGGUGUGCUUGGGAAUAGAUCUUUA .((((.((...((((......)))))))))).((((((.(((((..((((.......))))(((((..(((....)))...))))))))))..))))))........... ( -31.70) >DroPer_CAF1 10357 102 - 1 UCCGGGCAAUUCAGCAAGCCCGCUGUGCCGGCAAUGAAGACGCCACCACCAUCCAUGGGGGCACCCAUGGAUCUGUCCUCAAGGUGAGGAU-----CGCACAG---AUUC ..(((((..........)))))((((((.(((.........)))......(((((((((....)))))))))..((((((.....))))))-----.))))))---.... ( -44.20) >consensus UCCGGACAAUUCAGCAAGCCCGCUGUGCCGGCAAUGAAAACGCCGCCACCAUCAAUGGGUGCACCCAUGGAUCUGUCCUCAAGGUGAGUAU______G_A_AG___AUUA .((((.((...((((......)))))))))).........((((..........(((((....)))))(((....)))....))))........................ (-16.23 = -16.62 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:24 2006