Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,393,776 – 15,393,869 |
Length | 93 |
Max. P | 0.985982 |
Location | 15,393,776 – 15,393,869 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 69.42 |
Mean single sequence MFE | -22.08 |
Consensus MFE | -10.08 |
Energy contribution | -10.08 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.46 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.985982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15393776 93 - 22407834 UUGCAUUGCAAAACACCCCAAAAAUAAUACUAUUUUUGGUCCGCAUUCUCCU--------------CUAUGCGGGAUUCAUGAAGUUAUUCCUUGCUUUAUGUCCCG ((((...))))......(((((((((....)))))))))...((((......--------------..))))((((..((((((((........)))))))))))). ( -25.90) >DroSec_CAF1 139536 99 - 1 UUCCAUUAAAAAAAAUCCC--UAAUAUU------UUUGGUUCGCAGUCUCCUAUCGCCGCCAGCCUUUAUGGUGGAUUCAUGAAGUUAUUUCUUGCUUUAUGUCCGG .(((((((..((((((...--....)))------)))((((.((.((........)).)).))))....)))))))..((((((((........))))))))..... ( -19.70) >DroSim_CAF1 144478 103 - 1 UUCCAUUACAAAAAUCCCA--AAAUACUACUA--UUUUGGUCGCAUUCUCCUAUCGCCACCAGCCCUUAUGGUGGAUUCAUGAAGUUAUUCCUUGCUUUAUGUCCGG ..((............(((--(((((....))--))))))................((((((.......))))))...((((((((........))))))))...)) ( -22.80) >DroEre_CAF1 145884 87 - 1 UUCUAUAGCAGAACACCCUG-AAAUACUACUAUUUCUGGUC-------------------CAACCUCUACUGGGGAUUCAUGAAGUUAUUCCUAGCUUUAUGUCCGC .......((.((..(((..(-(((((....)))))).))).-------------------...((((....))))...((((((((((....)))))))))))).)) ( -19.60) >DroYak_CAF1 146669 106 - 1 UUUCGAUGCCUAACACCGCG-AAGUACUUCUAUUUUUGGUCCGCAUCCUCCUAUCGCCACCACGCUCUAUUGGGGAUUCAUGAAGUUAUUCCUUGCUUUAUGUCCGG ....(((((.....((((.(-(((((....))))))))))..))))).........((.(((........)))(((..((((((((........))))))))))))) ( -22.40) >consensus UUCCAUUGCAAAACACCCC__AAAUACUACUAUUUUUGGUCCGCAUUCUCCUAUCGCC_CCAGCCUCUAUGGGGGAUUCAUGAAGUUAUUCCUUGCUUUAUGUCCGG .........................................................................(((..((((((((........))))))))))).. (-10.08 = -10.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:12 2006