Locus 5397

Sequence ID 2L_DroMel_CAF1
Location 15,388,998 – 15,389,095
Length 97
Max. P 0.804455
window8568

overview

Window 8

Location 15,388,998 – 15,389,095
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 92.37
Mean single sequence MFE -27.25
Consensus MFE -24.49
Energy contribution -23.80
Covariance contribution -0.69
Combinations/Pair 1.18
Mean z-score -1.41
Structure conservation index 0.90
SVM decision value 0.63
SVM RNA-class probability 0.804455
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15388998 97 + 22407834
ACUUGGGGCAAUUAAAGUCGCUAAUUUAUGCACGGCAUCUUUUGGUAUUUUUAUGGGCAAUCAUACUCGGACAAGCAAGUGCAAUUCGCCCCAAGGC
.((((((((.......((((((((...((((...))))...))))).....(((((....)))))....)))..((....)).....)))))))).. ( -29.40)
>DroSec_CAF1 134800 97 + 1
ACUUGGGGCAAUUAAAGUCGCUAAUUUAUGCACGGCAUCUUUUGGUAUUUUUAUGGGCAAUCAUACUCGGACAAGCAAGUGCAUUUCGCCCCAAGGC
.((((((((.......((((((((...((((...))))...))))).....(((((....)))))....)))..((....)).....)))))))).. ( -29.40)
>DroSim_CAF1 139731 97 + 1
ACUUGGGGCAAUUAAAGUCGCUAAUUUAUGCACGGCAUCUUUUGGUAUUUUUAUGGGCAAUCAUACUCGGACAAGCAAGUGCAAUUCGCCCCAAGGC
.((((((((.......((((((((...((((...))))...))))).....(((((....)))))....)))..((....)).....)))))))).. ( -29.40)
>DroEre_CAF1 141113 97 + 1
ACUUGGGGCAAUUAAAGCCGCUAAUUUAUGCACGGCAUCUUUUGGUAUUUUUAUGGGCAAUCAUACUCGGACAAGCAAGUGCAGUUCGCCUCGAGGC
.((((((((.......((((((((...((((...))))...))))).........)))..........((((..((....)).)))))))))))).. ( -26.50)
>DroYak_CAF1 141815 97 + 1
ACUUGGGGCAAUUAAAGUUGCUAAUUUAUGCACGGCAUCUUUUGGUAUUUUUAUGGGCAAUCAUACUUGGACAAGCAAGUGCAGUUCGCCUCGAGGC
.((((((((...(((((.((((((...((((...))))...)))))).))))).((((.....((((((......))))))..)))))))))))).. ( -28.40)
>DroAna_CAF1 141881 97 + 1
AGUUGGUGUAGUUAGAGCUAUUAAUUUAUGCACGGCAUCUUUUGGUAUUUUUAUGGGCAAUCAUACUCGGACAAGCAAGUGCACCGUGAGCCGAGGC
...((((((...(((((.((((((...((((...))))...)))))).)))))...)).))))..(((((....((....))..(....)))))).. ( -20.40)
>consensus
ACUUGGGGCAAUUAAAGUCGCUAAUUUAUGCACGGCAUCUUUUGGUAUUUUUAUGGGCAAUCAUACUCGGACAAGCAAGUGCAAUUCGCCCCAAGGC
.((((((((...((((........))))(((((.((...((..(((((..((......))..)))))..))...))..)))))....)))))))).. (-24.49 = -23.80 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:09 2006