| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,382,948 – 15,383,039 |
| Length | 91 |
| Max. P | 0.654528 |
| Location | 15,382,948 – 15,383,039 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 81.10 |
| Mean single sequence MFE | -25.31 |
| Consensus MFE | -15.89 |
| Energy contribution | -16.33 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15382948 91 + 22407834 CUCUACAGCUCCUCCAGCACCUCUUUAC-CCUAUCGGUCAAGAGAAGAUAUAUGCGUACGUGGCUUGGGCUUUCGGCUGCAGAUUACGUACA .(((...(((.....)))..(((((.((-(.....))).))))).))).......((((((((.((((((.....))).))).)))))))). ( -24.70) >DroPse_CAF1 130524 86 + 1 CCCC-CCUUACC-CGCUCACCUCUUCAC-CUUAUCGGUCAAG--AAGAUAUAUGCGUACGUGGUUUAGGCUUUUGGCCGCAGAUUACGUAC- ....-.......-.((.....(((((((-(.....)))...)--)))).....))(((((((((((.(((.....)))..)))))))))))- ( -25.20) >DroSec_CAF1 128766 91 + 1 CUCU-CAGCUCCUACAGCACUUCCUAACUCCUAUCGGUCAAGCGAAGAUAUAUGCGUACGUGGUUUGGGCUUUCGGCUGCAGAUUACGUACA ....-..(((.....))).((((((....((....))...)).))))........(((((((((((((((.....))).)))))))))))). ( -25.50) >DroSim_CAF1 133688 91 + 1 CUCU-UAGCUCCUACAGCACCUCCUUACUCCUAUCGGUCAAGAGAAGAUAUAUGCGUACGUGGUUUGGGCUUUCGGCUGCAGAUUACGUACA ((((-(.(((.....)))(((..............))).)))))...........(((((((((((((((.....))).)))))))))))). ( -24.94) >DroAna_CAF1 136231 86 + 1 -----GGGAUAUACCACCACCUCCUCAC-CUUAUCGGUCAAAAGGAGCUAUAUGCGUACGUGGUUGGGGCUUUCGGCUGCAGAUUACGUACA -----((......)).....(((((.((-(.....)))....)))))........(((((((((((.(((.....))).)).))))))))). ( -26.30) >DroPer_CAF1 130674 85 + 1 CCCC-CC-CACC-CGCUCACCUCUUCAC-CUUAUCGGUCAAG--AAGAUAUAUGCGUACGUGGUUUAGGCUUUUGGCCGCAGAUUACGUAC- ....-..-....-.((.....(((((((-(.....)))...)--)))).....))(((((((((((.(((.....)))..)))))))))))- ( -25.20) >consensus CUCU_CAGCUCCUCCAGCACCUCCUCAC_CCUAUCGGUCAAGAGAAGAUAUAUGCGUACGUGGUUUGGGCUUUCGGCUGCAGAUUACGUACA .......................................................(((((((((((((((.....))).)))))))))))). (-15.89 = -16.33 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:03 2006