Locus 5392

Sequence ID 2L_DroMel_CAF1
Location 15,379,381 – 15,379,483
Length 102
Max. P 0.788047
window8561

overview

Window 1

Location 15,379,381 – 15,379,483
Length 102
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 69.29
Mean single sequence MFE -22.64
Consensus MFE -6.07
Energy contribution -7.29
Covariance contribution 1.22
Combinations/Pair 1.09
Mean z-score -2.22
Structure conservation index 0.27
SVM decision value 0.58
SVM RNA-class probability 0.788047
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15379381 102 - 22407834
GUUUAGUGGAGCACAGCCUCCACGUCCUGCUCCG----CCGACCAACAGCCUCC-GUUC--------UCCAUCCCCUAUCCUCGGCCUCAUCUUCAUCAUCUGA-UGGUCCCAUCC---
.....((((((((..((......))..)))))))----).(((((.(((.....-....--------......((........))...............))).-)))))......--- ( -23.31)
>DroPse_CAF1 127643 92 - 1
GUUUAGUGGAGC--------CAGAGCCAGCUCCAAGCCACGAUGAUCAUUCGCA-GUG-----------------CCAGGCACAGCCUCAUCUUCAUCAUUCUC-CGGGCUCAUCCUCG
.....(.(((..--------..(((((.((.....))...(((((......((.-(((-----------------(...)))).)).......)))))......-..))))).))).). ( -24.82)
>DroSec_CAF1 125230 102 - 1
GUUUAGUGGAGCACUGCCUCCACGUCCUGCUCCA----CCGACCAACAUCCUCC-GUUC--------UCCAUCCCCUAUCCUCGGCCUCAUCUUCAUCAUCUGA-UGGUCCCAUCC---
.....((((((((..((......))..)))))))----).(((((.......((-(...--------...............)))........(((.....)))-)))))......--- ( -21.57)
>DroSim_CAF1 129357 102 - 1
GUUUAGUGGAGCACAGCCUCCACGUCCUGCUCCA----CCGACCAACAUCCUCC-GUUC--------UCCAUCCCCUAUCCUCGGCCUCAUCUUCAUCAUCUGA-UGGUCCCAUCC---
.....((((((((..((......))..)))))))----).(((((.......((-(...--------...............)))........(((.....)))-)))))......--- ( -21.77)
>DroYak_CAF1 132204 92 - 1
GUUUAGUGGAGCACAGCCUCCACUGCCU---CCA----CUG--------CAUCCGCUCC--------UCCAUCCCCUAUCCUCGGCCUCAUCUUCAUCAUCUGA-UGGUCCCAUCC---
...((((((((..(((......))).))---)))----)))--------..........--------................((..(((((..........))-)))..))....--- ( -19.40)
>DroAna_CAF1 132804 100 - 1
GUUUACUGGAGCACUGACU---------GCUCCU----UCGAGCCACUCCCCUC-GAUCCGAACCGAUCCAUC--CGGUCCUCGGCCUCAUCUUCAUCAUCUGGCCAGUCUCAUCC---
.......((((((.....)---------))))).----(((((........)))-))...((((((.......--))))..))((((...............))))..........--- ( -24.96)
>consensus
GUUUAGUGGAGCACAGCCUCCACGUCCUGCUCCA____CCGACCAACAUCCUCC_GUUC________UCCAUCCCCUAUCCUCGGCCUCAUCUUCAUCAUCUGA_UGGUCCCAUCC___
.......(((((................)))))..................................................((((...((..........))..))))......... ( -6.07 =  -7.29 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:02 2006