Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,370,656 – 15,370,764 |
Length | 108 |
Max. P | 0.558910 |
Location | 15,370,656 – 15,370,764 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 95.25 |
Mean single sequence MFE | -20.17 |
Consensus MFE | -16.64 |
Energy contribution | -17.17 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.04 |
Mean z-score | -1.89 |
Structure conservation index | 0.82 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558910 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15370656 108 + 22407834 AAAUGUGCCUGACAAAAAUAGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGUGGCACAAUAAAUCACACGCUCAAAAGCUAGCGAUAAAAAUUAAUCACAAUGGUC ...((((((....((((((.(((.....)))))))))...((((....))))..))))))..........((((........))))...................... ( -20.10) >DroSec_CAF1 116464 108 + 1 AAAUGUGCCUGACAAAAAUUGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGCGGCACAAUAAAUCACACGCUCAAAAGCCAGCGAUAAAAAUUAAUCACAAUGGUC ...((((((.....((((.((((.....)))).))))...((((....))))..))))))..........((((........))))...................... ( -21.10) >DroSim_CAF1 120559 108 + 1 AAAUGUGCCUGACAAAAAUUGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGCGGCACAAUAAAUCACACGCUCAAAAGCCAGCGAUAAAAAUUAAUCACAAUGGUC ...((((((.....((((.((((.....)))).))))...((((....))))..))))))..........((((........))))...................... ( -21.10) >DroEre_CAF1 122818 108 + 1 AAAUGUGCCUGACAAAAAUUGCAUAGCUUGCAUUUUUAAAUGAUUUAUAUCACUGGCACAAUAAAUCACACGCUCAAAAGCCAGCGAUAAAAAUUAAUCACAAUGGUC ...((((.......((((.((((.....)))).))))...((((((.((((.(((((......................))))).)))).))))))..))))...... ( -22.35) >DroYak_CAF1 122584 108 + 1 AAAUGUGCCUGACAAAAAUGGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGCGGCACAAUAAAUCACACGCUCAAAGGCAAGCGAUAAAAAUUAAUCACAAUGGUC ...((((((..........)))(((((((((.........((((....))))(((...............)))......)))))))))...........)))...... ( -22.06) >DroAna_CAF1 124309 107 + 1 AAAUGUGCCUGACAAAAAUUGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGUGCGACAAUAAAUCAC-CGCUCAAAAGCCGCCUAUAAAAAUUAAUCACAAUAGUC ...((((.......((((.((((.....)))).))))...((((((.(((.((.(((............-.(((....))))))))))).))))))..))))...... ( -14.31) >consensus AAAUGUGCCUGACAAAAAUUGCAUUGCUUGCAUUUUUAAAUGAUUUAUAUCAGCGGCACAAUAAAUCACACGCUCAAAAGCCAGCGAUAAAAAUUAAUCACAAUGGUC ...((((((....((((((.(((.....)))))))))...((((....))))..))))))..........((((........))))...................... (-16.64 = -17.17 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:53 2006