Locus 5387

Sequence ID 2L_DroMel_CAF1
Location 15,366,180 – 15,366,281
Length 101
Max. P 0.701022
window8549 window8550

overview

Window 9

Location 15,366,180 – 15,366,281
Length 101
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 81.74
Mean single sequence MFE -23.30
Consensus MFE -15.59
Energy contribution -16.78
Covariance contribution 1.20
Combinations/Pair 1.04
Mean z-score -1.58
Structure conservation index 0.67
SVM decision value 0.12
SVM RNA-class probability 0.594238
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15366180 101 + 22407834
AUUUUUUAUGCCAGUGC-AGACAGUCUGUCAGCCCCUCAUCGAGCCGUGGUCAAAGUUUACCAUCAAAUUGCUAAAAUAGCAAAUAAUGAAGCUGACAGCAG
........(((....))-)....(.((((((((...((((......(((((........)))))....((((((...))))))...)))).))))))))).. ( -24.20)
>DroPse_CAF1 114727 82 + 1
----------------CGGGC---CAUGACAGGCACUCAUCGAGCCGUGGUCAAAGUUUACCUUCAAAUUGCUAAAAUAGCAAAUAAUGAAGCUGACAGCA-
----------------..(((---(((....(((.(.....).)))))))))...(((...(((((..((((((...))))))....)))))..)))....- ( -20.30)
>DroSim_CAF1 115843 100 + 1
AUUU-UUCUGCCAGUGC-ACACAGUCUGUCAGCCACUCAUCGAGCCGUGGUCAAAGUUUACCAUCAAAUUGCUAAAAUAGCAAAUAAUGAAGCUGACAGCAG
....-...(((....))-)....(.((((((((...((((......(((((........)))))....((((((...))))))...)))).))))))))).. ( -23.70)
>DroYak_CAF1 118270 100 + 1
AUUU-UCCUGCCAGUGC-GGACAUUCUGUCAGCCACUCAUCGAGACGUGGUCAAAGUUUACCAUCAAAUUGCUAAAAUAGCAAAUAAUGAAGCUGACAGCAG
....-..((((....))-)).....((((((((...((((......(((((........)))))....((((((...))))))...)))).))))))))... ( -25.40)
>DroAna_CAF1 119975 100 + 1
AUUU-UUUUCUCAGUGC-AGCCCGUCUGUCAGCCACUCAUUGAGCCGUGGUCAAAGUUUGCCAUCAAAUUGCUAAAAUAGCAAAUAAUGAAGCUGACAGCAG
....-............-.....(.((((((((...((((((....(((((........)))))....((((((...)))))).)))))).))))))))).. ( -25.90)
>DroPer_CAF1 114712 82 + 1
----------------CGGGC---CAUGACAGGCACUCAUCGAGCCGUGGUCAAAGUUUACCUUCAAAUUGCUAAAAUAGCAAAUAAUGAAGCUGACAGCG-
----------------..(((---(((....(((.(.....).)))))))))...(((...(((((..((((((...))))))....)))))..)))....- ( -20.30)
>consensus
AUUU_UU_UGCCAGUGC_AGACAGUCUGUCAGCCACUCAUCGAGCCGUGGUCAAAGUUUACCAUCAAAUUGCUAAAAUAGCAAAUAAUGAAGCUGACAGCAG
.........................((((((((...((((......(((((........)))))....((((((...))))))...)))).))))))))... (-15.59 = -16.78 +   1.20)

alignment

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secondary structure

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dotplot

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Window 0

Location 15,366,180 – 15,366,281
Length 101
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.74
Mean single sequence MFE -26.77
Consensus MFE -18.74
Energy contribution -19.77
Covariance contribution 1.03
Combinations/Pair 1.04
Mean z-score -1.72
Structure conservation index 0.70
SVM decision value 0.35
SVM RNA-class probability 0.701022
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15366180 101 - 22407834
CUGCUGUCAGCUUCAUUAUUUGCUAUUUUAGCAAUUUGAUGGUAAACUUUGACCACGGCUCGAUGAGGGGCUGACAGACUGUCU-GCACUGGCAUAAAAAAU
...(((((((((((....(((((((((..(....)..)))))))))(.(((((....).)))).).)))))))))))..((((.-.....))))........ ( -30.30)
>DroPse_CAF1 114727 82 - 1
-UGCUGUCAGCUUCAUUAUUUGCUAUUUUAGCAAUUUGAAGGUAAACUUUGACCACGGCUCGAUGAGUGCCUGUCAUG---GCCCG----------------
-....((((.(((((....((((((...))))))..)))))........((((...(((.(.....).))).))))))---))...---------------- ( -20.40)
>DroSim_CAF1 115843 100 - 1
CUGCUGUCAGCUUCAUUAUUUGCUAUUUUAGCAAUUUGAUGGUAAACUUUGACCACGGCUCGAUGAGUGGCUGACAGACUGUGU-GCACUGGCAGAA-AAAU
...((((((((((((((..((((((...)))))).(((.((((........)))))))...)))))..))))))))).((((..-......))))..-.... ( -28.80)
>DroYak_CAF1 118270 100 - 1
CUGCUGUCAGCUUCAUUAUUUGCUAUUUUAGCAAUUUGAUGGUAAACUUUGACCACGUCUCGAUGAGUGGCUGACAGAAUGUCC-GCACUGGCAGGA-AAAU
...((((((((.(((...(((((((((..(....)..)))))))))...))).(((.((.....)))))))))))))....(((-((....)).)))-.... ( -30.00)
>DroAna_CAF1 119975 100 - 1
CUGCUGUCAGCUUCAUUAUUUGCUAUUUUAGCAAUUUGAUGGCAAACUUUGACCACGGCUCAAUGAGUGGCUGACAGACGGGCU-GCACUGAGAAAA-AAAU
(((((((((((((((...(((((((((..(....)..)))))))))...))).....((((...))))))))))))).)))...-............-.... ( -30.70)
>DroPer_CAF1 114712 82 - 1
-CGCUGUCAGCUUCAUUAUUUGCUAUUUUAGCAAUUUGAAGGUAAACUUUGACCACGGCUCGAUGAGUGCCUGUCAUG---GCCCG----------------
-....((((.(((((....((((((...))))))..)))))........((((...(((.(.....).))).))))))---))...---------------- ( -20.40)
>consensus
CUGCUGUCAGCUUCAUUAUUUGCUAUUUUAGCAAUUUGAUGGUAAACUUUGACCACGGCUCGAUGAGUGGCUGACAGACUGGCC_GCACUGGCA_AA_AAAU
...((((((((((((((..((((((...))))))......(((........))).......)))))..)))))))))......................... (-18.74 = -19.77 +   1.03)

alignment

Postscript

secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:52 2006