Locus 5385

Sequence ID 2L_DroMel_CAF1
Location 15,357,156 – 15,357,264
Length 108
Max. P 0.650978
window8544

overview

Window 4

Location 15,357,156 – 15,357,264
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.20
Mean single sequence MFE -30.45
Consensus MFE -14.96
Energy contribution -15.68
Covariance contribution 0.73
Combinations/Pair 1.23
Mean z-score -1.95
Structure conservation index 0.49
SVM decision value 0.24
SVM RNA-class probability 0.650978
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15357156 108 - 22407834
ACGGCAUUACCUCAA---CCACCUUACCAUC----ACCAUUGUCA--GCAGUCCCA---ACUGCGUCCAUGGUGAAGAAGUCCUUGGUCCAAGGAGUCAAAAAUAUGUCAAAUCGCACAA
..(((((........---...........((----(((((.(...--(((((....---)))))..).))))))).((..((((((...)))))).))......)))))........... ( -28.10)
>DroSec_CAF1 103138 108 - 1
ACGGCAUCACCUCGA---CCACUUUGCCAUC----ACCAUUGUCU--GCAGUCCCA---ACUGCGUCCAUGGUGAAGAACUCCUUGGUCCAAGGAGCCAAAAAUAUGUCCAAUCGCACAA
..((((.........---......)))).((----(((((.(..(--(((((....---))))))..))))))))....(((((((...)))))))........................ ( -30.36)
>DroSim_CAF1 106572 108 - 1
ACGGCAUCACCUCGA---CCACUUUGCCAUC----ACCAUUGUCA--GCAGUCCCA---ACUGCGUCCAUGGUGAAGAACUCCUUGGUCCAAGGAGCCAAAAAUAUGUCAAAUCGCGCAA
..((((.........---......)))).((----(((((.(...--(((((....---)))))..).)))))))....(((((((...)))))))........................ ( -29.66)
>DroEre_CAF1 109146 108 - 1
AUGGCAUCACCUCGA---CCACUUUGCCAGC----ACCAUUGUCA--GCAGUUCCC---ACUGCGUCUAUGGUGAAGAGCUCCUUGAUCCAAGGAGUCAAAUCUUUGGCUAAUCGCUCAA
.(((((.........---......))))).(----(((((.(...--(((((....---)))))..).))))))..((((((((((...))))))(((((....))))).....)))).. ( -35.76)
>DroYak_CAF1 107721 108 - 1
AUGGCAUCACCUCGA---CCACGUUGCCAUC----AGCAUUGUCA--GCAAUUCCC---ACUGCGUCUAUGGUGAAGAACUCCUUGGUUCAAGGAGUCCAAAAUGUGUCUAAUCGUACGA
..(((((((((..((---(.(((.(((....----.))).)))..--(((......---..))))))...))))).(.((((((((...)))))))).)......))))........... ( -28.30)
>DroAna_CAF1 109361 120 - 1
AGGGCAUGACCAUGGAAUCCACUAUGCUACCGUCGGCCAAUGUCACAUCAGAGCCACAGGCCACGAGCAUUGUCACGAACUCUCUGGUCCAGGCGGUCAGAAAUGUGUCGCAACAGAUGA
..(((((...(((((......)))))(((((((((((...((......))..)))...(((((.(((..((......))..))))))))..)))))).))....)))))........... ( -30.50)
>consensus
ACGGCAUCACCUCGA___CCACUUUGCCAUC____ACCAUUGUCA__GCAGUCCCA___ACUGCGUCCAUGGUGAAGAACUCCUUGGUCCAAGGAGUCAAAAAUAUGUCAAAUCGCACAA
..(((((((((..(.....)...........................(((((.......)))))......)))))....(((((((...))))))).........))))........... (-14.96 = -15.68 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:46 2006