Locus 5384

Sequence ID 2L_DroMel_CAF1
Location 15,356,402 – 15,356,492
Length 90
Max. P 0.567688
window8543

overview

Window 3

Location 15,356,402 – 15,356,492
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 87.08
Mean single sequence MFE -28.75
Consensus MFE -20.67
Energy contribution -22.75
Covariance contribution 2.08
Combinations/Pair 1.17
Mean z-score -3.05
Structure conservation index 0.72
SVM decision value 0.07
SVM RNA-class probability 0.567688
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15356402 90 + 22407834
AAACCAGAAACGCGAACAGCGUCGCUGUGUUUGAGUUU-UAUUUUUGAGCUCGGCGCGCGUUUGUUGUCAGUUUUGGUUUGAAAUAUUUAC
(((((((((((((((((.(((.(((((.(((..((...-....))..))).))))))))))))).)))...)))))))))........... ( -31.70)
>DroSec_CAF1 102309 89 + 1
AAACCAGAAACGCGAACAGCG-CGCUGUGUUUGAGUUU-UAUUUUUGAGCUCGGCGCGCGUUUGUUGUCAGUUUUGGUUUGAAUUACUUAC
(((((((((((((((((.(((-(((((.(((..((...-....))..))).))))))))))))).)))...)))))))))........... ( -35.50)
>DroSim_CAF1 105739 90 + 1
AAACCAGAAACGCGAACAGCGUCGCUGUGUUUGAGUUU-UAUUUUUGAGCUCGGCGCGCGUUUGUUGUCAGUUUUGGUUUGAAAUAUUUAC
(((((((((((((((((.(((.(((((.(((..((...-....))..))).))))))))))))).)))...)))))))))........... ( -31.70)
>DroEre_CAF1 108213 91 + 1
AAACCAGAAACGCGAACAACGACGCUGUGUUUGAGUUUUUGUUUUUUAGCUCGGCGCGCGUUUGUUGUCAGUUUUGGUUUGAAAUAUUUAC
((((((((...((..((((((((((.(((((.(((((..........))))))))))))).)))))))..))))))))))........... ( -28.50)
>DroYak_CAF1 106843 90 + 1
AAACCAGAAACGCGAACCACGUCGCUGUGUUUGAGCUU-UACUUUUAAGCUCGGCGCGCGUUUGUUGUCAGUUUUGGUUUGAAAUAUUUAC
(((((((((..((((...(((((((((.(((((((...-....))))))).))))).))))...))))...)))))))))........... ( -28.30)
>DroAna_CAF1 108550 78 + 1
AAACCAGAAACAAAAGCAAGGU---AGUGCU----------UUUUUGUGCUCGGCUCGCGUUUGUUGUCAGGUUCGGUUUGAAAUAUUUAC
.((((.((((((((.((.((.(---((..(.----------.....)..)).).)).)).)))))).)).))))................. ( -16.80)
>consensus
AAACCAGAAACGCGAACAACGUCGCUGUGUUUGAGUUU_UAUUUUUGAGCUCGGCGCGCGUUUGUUGUCAGUUUUGGUUUGAAAUAUUUAC
(((((((((..((((..((((((((((.(((((((........))))))).))))).)))))..))))...)))))))))........... (-20.67 = -22.75 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:45 2006