| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,321,482 – 15,321,573 |
| Length | 91 |
| Max. P | 0.722416 |
| Location | 15,321,482 – 15,321,573 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.29 |
| Mean single sequence MFE | -18.28 |
| Consensus MFE | -12.51 |
| Energy contribution | -14.12 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15321482 91 - 22407834 ------------UUCUUCUUAUUAGUGUUCCAAGAUUUAUGGCAAUUAAUAAUAGGUAUAAAGCAAUCGAGAAUGGCUGCCACAUCCGUUCCCAAUCAAUUAG-------------- ------------..(((.((((((((...(((.......)))..)))))))).)))............(.((((((.((...)).)))))).)..........-------------- ( -13.50) >DroPse_CAF1 68335 99 - 1 UUAUUAUUAUGAUU---CCUAUUAUUGAUCCAAGAUUUAUGGCAAUUAAUAAUAGGUAUAAGCCAGUCGA-AAUGGAUGCCACUUCCGCUCCCAAUCAAUUAA-------------- .........(((((---(((((((((((((((.......)))..)))))))))))).....(..(((.((-(.(((...))).))).)))..)))))).....-------------- ( -19.80) >DroEre_CAF1 72459 88 - 1 ------------UU---CUUAUUAUUGAUCCAAGAUUUAUGACAAUUAAUAAUAGGUAUAAAGCAAUUGGGAAUGGAUGCCACUUCCGUUCCCAAUCAAUUAG-------------- ------------..---((((((((((((...............)))))))))))).........((((((((((((.......)))))))))))).......-------------- ( -24.26) >DroYak_CAF1 71352 88 - 1 ------------UU---CUUAUUAUUGAACCAAGAUUUAUGACAAUUAAUAAUAGGUAUAAAGCAAUCGAGAAUGGAUGCCACUUCCGUUCCCAAUCAAUUAG-------------- ------------..---(((((((((((.................)))))))))))............(.(((((((.......))))))).)..........-------------- ( -14.23) >DroAna_CAF1 74601 102 - 1 ------------UU---CUUAUUAUUGAUCCAAGAUUUAUGGCAAUUAAUAAUAGGUAUAAAGCCAUUGAGAAUGGUUGCCACUUCCGUUCCCAAUCCAUUAAACAAUUAACAGAGA ------------..---(((((((((((((((.......)))..)))))))))))).........((((.((((((.........)))))).))))..................... ( -18.10) >DroPer_CAF1 68598 99 - 1 UUAUUAUUAUGAUU---CCUAUUAUUGAUCCAAGAUUUAUGGCAAUUAAUAAUAGGUAUAAGCCAGUCGA-AAUGGAUGCCACUUCCGCUCCCAAUCAAUUAA-------------- .........(((((---(((((((((((((((.......)))..)))))))))))).....(..(((.((-(.(((...))).))).)))..)))))).....-------------- ( -19.80) >consensus ____________UU___CUUAUUAUUGAUCCAAGAUUUAUGGCAAUUAAUAAUAGGUAUAAAGCAAUCGAGAAUGGAUGCCACUUCCGUUCCCAAUCAAUUAA______________ .................(((((((((((((((.......)))..))))))))))))............(.(((((((.......))))))).)........................ (-12.51 = -14.12 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:43 2006