Locus 5381

Sequence ID 2L_DroMel_CAF1
Location 15,320,213 – 15,320,317
Length 104
Max. P 0.581717
window8540

overview

Window 0

Location 15,320,213 – 15,320,317
Length 104
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.30
Mean single sequence MFE -18.06
Consensus MFE -10.98
Energy contribution -11.32
Covariance contribution 0.34
Combinations/Pair 1.29
Mean z-score -1.47
Structure conservation index 0.61
SVM decision value 0.10
SVM RNA-class probability 0.581717
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15320213 104 - 22407834
GCCUUGCUUUCGAGCCCA--ACCAAAUAUGUAUAUUUUU-----GGUUUGACUGGGCAAAUA-ACCCAUUUUGUGGUAAAUAUGCUCAUGUCAUCGAAAAUCACGAUCACCU
.......((((((....(--((((((..........)))-----))))((((((((((.((.-..((((...))))...)).)))))).))))))))))............. ( -24.00)
>DroGri_CAF1 76639 87 - 1
AUCUUG--------ACCA--AC-GCAUAU--AA------------AUAUAGCUAUACAAAUAAACCCAUUUUGUGGUAAAUAUGCUCGUGUCAUCAAAAAUCACGAUCACAA
....((--------(...--..-((((((--..------------.....((((((.((((......))))))))))..))))))(((((...........))))))))... ( -11.70)
>DroSec_CAF1 67364 109 - 1
AUCUUGCUUGCGAGCCCA--ACCAAAUAUGUAUAUUUUUUUUUUUUUUUGACUGGGCAAAUA-ACCCAUUUUGUGGUAAAUAUGCUCAUGUCAUCGAAAAUCACGAUCACCU
..((((....))))....--.....................(((((..((((((((((.((.-..((((...))))...)).)))))).))))..)))))............ ( -18.20)
>DroSim_CAF1 67839 106 - 1
AUCUUGCUUGCGAGCCCA--ACCAAAUAUGUAUAUUUUUUU---AUUUUGCUUGGGCAAAUA-ACCCAUUUUGUGGUAAAUAUGCUCAUGUCAUCGAAAAUCACGAUCACCU
.........(((.(((((--(.((((...............---..)))).)))))).....-((((.....).))).....)))....((.((((.......)))).)).. ( -17.83)
>DroEre_CAF1 71211 90 - 1
-------UUACUAGCCCA--ACCAAAUGU--AUAUU---------UUUUGACUGGGCAAAUA-ACCCAUUUUGUGGUAAAUAUGCUCAUGUCAUCGAAAAUCACGAUCAUC-
-------......(((((--..((((...--.....---------.))))..))))).....-.......(((((((....((((....).))).....))))))).....- ( -16.00)
>DroYak_CAF1 69826 96 - 1
AUCGUGCUUACUAGCCCAAAACCAAAUAU--AU------------UUUUGACUGAGCAAAUA-ACCCAUUUUGUGGUAAAUAUGCUCAUGUCAUUGAAAAUCACGAUCACC-
((((((((....)))..............--.(------------(..((((((((((.((.-..((((...))))...)).)))))).))))..)).....)))))....- ( -20.60)
>consensus
AUCUUGCUUACGAGCCCA__ACCAAAUAU__AUAUU_________UUUUGACUGGGCAAAUA_ACCCAUUUUGUGGUAAAUAUGCUCAUGUCAUCGAAAAUCACGAUCACCU
................................................((((((((((.....((((.....).))).....)))))).))))................... (-10.98 = -11.32 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:42 2006