Locus 5378

Sequence ID 2L_DroMel_CAF1
Location 15,300,234 – 15,300,333
Length 99
Max. P 0.586201
window8536

overview

Window 6

Location 15,300,234 – 15,300,333
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 93.80
Mean single sequence MFE -22.53
Consensus MFE -20.64
Energy contribution -20.83
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -1.04
Structure conservation index 0.92
SVM decision value 0.11
SVM RNA-class probability 0.586201
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15300234 99 + 22407834
GCUCAAAGGAACCACAACAAUGCCACAAGUUGCAAAUGCGAGUGGGGCAGCAAACAAAUCUCCCCAGCGACAAAGCAAAUGAGACCCACUGCGCAUUGC
....................(((........)))((((((((((((...(....)...((((....((......))....)))))))))).)))))).. ( -23.00)
>DroSec_CAF1 47197 99 + 1
ACUGGAAGGAACCACAACAAUGCCACAAGUUGCAAAUGCGAGUGGGGCAGCAAACAAAUCUCCCCAGCGACAAAGCAAAUGAGACCCACUGCGCAUUGC
..(((......)))......(((........)))((((((((((((...(....)...((((....((......))....)))))))))).)))))).. ( -24.20)
>DroSim_CAF1 48007 99 + 1
ACUGGAAGGAACCACAACAAUGCCACAAGUUGCAAAUGCGAGUGGGGCAGCAAACAAAUCUCCCCAGCGACAAAGCAAAUGAGACCCACUGCGCAUUGC
..(((......)))......(((........)))((((((((((((...(....)...((((....((......))....)))))))))).)))))).. ( -24.20)
>DroEre_CAF1 51376 99 + 1
GCUCAAAGGAAGCACAACAAUGCCACAAGUUGCAAAUGCGAGUGGGGCAGCAAACAAAUCUCCCCAGCGACAAAGCAAAUGAGACCCACUGCGCAUUGC
((((....).))).......(((........)))((((((((((((...(....)...((((....((......))....)))))))))).)))))).. ( -24.60)
>DroYak_CAF1 49790 99 + 1
GCUUAAAGAAACCUCAACAAUGCCACAAGUUGCAAAUGCGAGUGGGGCAGCAAACAAAUCUCCUCAGCGACAAAGCAAAUGAGACCCACUGCGCAUUGC
....................(((........)))((((((((((((...(....)...((((....((......))....)))))))))).)))))).. ( -23.00)
>DroAna_CAF1 52709 99 + 1
GUAUAAAGGCACUGCAACAAUGCCACAAGUUGCAAAUGCGAAUGGGCCAGCAAACAAAUCUCCCCAGUGACAAAGCAAAUGAGACCCACUGCGAAUUGC
.......((((.((...)).)))).(((.(((((..(((..........)))......((((....((......))....)))).....))))).))). ( -16.20)
>consensus
GCUCAAAGGAACCACAACAAUGCCACAAGUUGCAAAUGCGAGUGGGGCAGCAAACAAAUCUCCCCAGCGACAAAGCAAAUGAGACCCACUGCGCAUUGC
....................(((........)))((((((((((((...(....)...((((....((......))....)))))))))).)))))).. (-20.64 = -20.83 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:38 2006