Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,292,418 – 15,292,519 |
Length | 101 |
Max. P | 0.961291 |
Location | 15,292,418 – 15,292,519 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.70 |
Mean single sequence MFE | -40.18 |
Consensus MFE | -22.71 |
Energy contribution | -24.77 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.23 |
Mean z-score | -2.64 |
Structure conservation index | 0.57 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.961291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15292418 101 - 22407834 GAUCACCUGGCACUUGGC--CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAUG------GCCAGGGCCACAGUCGAGGCAAGUGGAGUCUCUA .........(((.(((((--(((..(((....)))..)))))))).)))((..(((((...((((..((------((....))))..).)))....)))))..)).... ( -44.30) >DroSec_CAF1 39550 101 - 1 GAUCACCUGGCACUUGGC--CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAUG------GCCAGGGCCACAGCCGAGGCAAGUGGAGUCUCUA (((..(((((((.(((((--(((..(((....)))..)))))))).)))...(((((.........)))------)))))).((((.((....))..)))).))).... ( -45.10) >DroSim_CAF1 40338 101 - 1 GAUCACCUGGCACUUGGC--CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAUG------GCCAGGGCCACAGCCGAGGCAAGUGGAGUCUCUA (((..(((((((.(((((--(((..(((....)))..)))))))).)))...(((((.........)))------)))))).((((.((....))..)))).))).... ( -45.10) >DroEre_CAF1 43177 96 - 1 GAUCGGCUGGCA-------CUUGGCCCACAGAUGGGUCAGGGCAAUUGCGAGGCCAUUAUAUCGCCAUU------GCCAGGGCCACAGCCAUGGCAAGUGGAGUCUCUA ....(((((((.-------(((((((((....)))))))))((....))...))).........(((((------((((.(((....))).)))).))))))))).... ( -41.00) >DroYak_CAF1 41763 109 - 1 GAUCACCUGGCACUUGGCACUUGGCCCAGAGUUGGGUCAGGCCAAUUGCGAAGGCAUUAUAUCGCCAUGACCACGGCCAGGGCCACAGACAAGGUAAGUGGAGUCUCUA (((..(((.((.((((...((((((((.(.((((((((((((....(((....))).......))).))))).))))).)))))).)).)))))).)).)..))).... ( -42.50) >DroAna_CAF1 44505 78 - 1 GAUCACCUGGCAGACGUU-------C--GAGACGGGUCAGGCCAAUUCCAGAGCCAUUAAAUGGCCAGA------GCCAGGACCA--------GCAAGUGG-------- .....((((((...((((-------.--..))))(((((((((.......).)))......)))))...------)))))).(((--------.....)))-------- ( -23.10) >consensus GAUCACCUGGCACUUGGC__CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAUG______GCCAGGGCCACAGCCGAGGCAAGUGGAGUCUCUA .....((((((....(((..(((((((......))))))))))....((((..........))))..........)))))).((((.((....))..))))........ (-22.71 = -24.77 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:35 2006