Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,288,499 – 15,288,597 |
Length | 98 |
Max. P | 0.908591 |
Location | 15,288,499 – 15,288,597 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 74.51 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -11.10 |
Energy contribution | -11.30 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.38 |
Mean z-score | -2.29 |
Structure conservation index | 0.41 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15288499 98 + 22407834 --CAAAGGAGUUCCUUCGAAAAAUUGUCAAAUGUU---GUAGGGU-----CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACUUCAUCAAAAGGACGUUA --(.((((....)))).).......(((...((((---(((((((-----(....))).))).))))))...(((((((((....))).))))))......))).... ( -29.70) >DroSec_CAF1 35556 98 + 1 --CAAAGGAGUUCCUUUGAAAAAUUGUCAAAUGUU---GUAGGGU-----CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACUUCAUCAAAAGGACGUUA --((((((....)))))).......(((...((((---(((((((-----(....))).))).))))))...(((((((((....))).))))))......))).... ( -33.80) >DroSim_CAF1 36350 98 + 1 --CAAAGGAGUUCCUUUGAAAAAUUGUCAAAUGUU---GUAGGGU-----CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACUUCAUCAAAAGGACGUUA --((((((....)))))).......(((...((((---(((((((-----(....))).))).))))))...(((((((((....))).))))))......))).... ( -33.80) >DroEre_CAF1 39039 83 + 1 --CUAAGGAGUUCCUCG---------------GUC---CUCGGGU-----CCUCGGAUACCUGGGCAUAGAAAUGGAGCUCGGAAGAGAAUUCUUCGAAAGGACGUUA --.....(((((((((.---------------(((---(..((((-----(....))).)).))))...))...))))))).((((......))))............ ( -24.70) >DroWil_CAF1 60379 98 + 1 ACCAAAUGAAUUCCUUUUAAAACU--CCAUUGGCUAUAGUAUAGUUUUGGCUUGGUUUACAU---AACAAAAAAGAAA-----AAAAAAGAUUUUCAAAUUGACGUUA ......((((...(((((......--(((..((((((...)))))).)))(((.(((.....---)))....)))...-----..)))))...))))........... ( -10.00) >DroYak_CAF1 37658 98 + 1 --UAAAGGAGUUCCCUUGAAAAUUUUCCAAAUGUU---GUAGGGU-----CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACAUCUUCAAAAGGACGUUA --.......((((..(((((....(((((..((((---(((((((-----(....))).))).))))))....)))))(((....))).....)))))..)))).... ( -29.10) >consensus __CAAAGGAGUUCCUUUGAAAAAUUGUCAAAUGUU___GUAGGGU_____CCUCGGAUACCUGGCAACAGAAAUGGAGCUCGGAAGAGACUUCAUCAAAAGGACGUUA .......(((((((...........................(((.......)))......(((....)))....)))))))........................... (-11.10 = -11.30 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:34 2006