Locus 5374

Sequence ID 2L_DroMel_CAF1
Location 15,286,720 – 15,286,819
Length 99
Max. P 0.943625
window8530 window8531

overview

Window 0

Location 15,286,720 – 15,286,819
Length 99
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 83.22
Mean single sequence MFE -39.40
Consensus MFE -24.94
Energy contribution -27.39
Covariance contribution 2.45
Combinations/Pair 1.03
Mean z-score -2.56
Structure conservation index 0.63
SVM decision value 0.72
SVM RNA-class probability 0.832496
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15286720 99 + 22407834
UGGUCUCCCCGAAGACCCUGCUCCUGCUCCUGCUCCACCGCCUCAUCCACCACCUGGAGGAAGAAG----GAGGAGGAGGCUGGCAUGCAAAAUCGAAUUGUG
.(((((......))))).(((...(((((((.((((.((...((.(((.((....)).))).)).)----).)))).)))..)))).)))............. ( -34.00)
>DroSec_CAF1 33875 94 + 1
UGCUCACCCCGGAGAUCCAGCUCCUGCUCCUCCUCAUCCU---------CCACCUGAACGAAGAAGGGAGGAGGAGGAGGCUGGCAUGCAAAAUCGAAUUGUG
(((.......((((......))))(((((((((((.((((---------((..((......))...)))))).)))))))..)))).)))............. ( -37.00)
>DroSim_CAF1 34710 98 + 1
UGGUCUCCCCGGAGACCCAGCUCCUGCUCCUCCUCCUGCUCC----CCACCACCUGCAGGAAGAAG-GAGGAGGAGGAGGCUGGCAUGCAAAAUCGAAUUGUG
.((((((....))))))((((((((.(((((((((((((...----.........))))))....)-)))))).)))).))))....((((.......)))). ( -47.20)
>consensus
UGGUCUCCCCGGAGACCCAGCUCCUGCUCCUCCUCCUCCUCC____CCACCACCUGAAGGAAGAAG_GAGGAGGAGGAGGCUGGCAUGCAAAAUCGAAUUGUG
.((((((....))))))..((((((.(((((((((((((................))))))........))))))).)))..)))..((((.......)))). (-24.94 = -27.39 +   2.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 15,286,720 – 15,286,819
Length 99
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 83.22
Mean single sequence MFE -43.87
Consensus MFE -29.54
Energy contribution -30.32
Covariance contribution 0.78
Combinations/Pair 1.15
Mean z-score -2.83
Structure conservation index 0.67
SVM decision value 1.34
SVM RNA-class probability 0.943625
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15286720 99 - 22407834
CACAAUUCGAUUUUGCAUGCCAGCCUCCUCCUC----CUUCUUCCUCCAGGUGGUGGAUGAGGCGGUGGAGCAGGAGCAGGAGCAGGGUCUUCGGGGAGACCA
........((((((((.((((...((((.((.(----(((..(((.((....)).))).)))).)).))))...).)))...))))))))....((....)). ( -39.80)
>DroSec_CAF1 33875 94 - 1
CACAAUUCGAUUUUGCAUGCCAGCCUCCUCCUCCUCCCUUCUUCGUUCAGGUGG---------AGGAUGAGGAGGAGCAGGAGCUGGAUCUCCGGGGUGAGCA
.............(((.((((..(((.((((((((((((((.((.....)).))---------)))..))))))))).)))..((((....)))))))).))) ( -39.60)
>DroSim_CAF1 34710 98 - 1
CACAAUUCGAUUUUGCAUGCCAGCCUCCUCCUCCUC-CUUCUUCCUGCAGGUGGUGG----GGAGCAGGAGGAGGAGCAGGAGCUGGGUCUCCGGGGAGACCA
...............((.((...(((.(((((((((-((.(((((..(.....)..)----)))).))))))))))).))).))))((((((....)))))). ( -52.20)
>consensus
CACAAUUCGAUUUUGCAUGCCAGCCUCCUCCUCCUC_CUUCUUCCUCCAGGUGGUGG____GGAGGAGGAGGAGGAGCAGGAGCUGGGUCUCCGGGGAGACCA
....................((((.((((.((((.....(((((((((................))))))))))))).))))))))((((((....)))))). (-29.54 = -30.32 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:33 2006