Locus 5372

Sequence ID 2L_DroMel_CAF1
Location 15,270,622 – 15,270,742
Length 120
Max. P 0.571440
window8527

overview

Window 7

Location 15,270,622 – 15,270,742
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.67
Mean single sequence MFE -44.52
Consensus MFE -22.97
Energy contribution -24.05
Covariance contribution 1.08
Combinations/Pair 1.29
Mean z-score -1.90
Structure conservation index 0.52
SVM decision value 0.08
SVM RNA-class probability 0.571440
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15270622 120 - 22407834
CGGAUGUCUGGGUCUGGACAAGGACACCAUGAAACUGGUUCCUGGAGGACCCACUGAACAAGCGCAGAAGGCAUUGGAGAAUCUGGAGGCUGUUCUAAAGGCGGCCGAUUCCGGAGUGGA
(.(((((((((((((...((.(((.((((......)))))))))..)))))).(((........))).))))))).)....(((((((((((((.....)))))))...))))))..... ( -46.30)
>DroVir_CAF1 20210 120 - 1
CGGCUGUUUGGGUCUGGACAAGUCAACUAUGCAAUUGGUGCCAGGUGGCGCCACUGCGCAAGCAGAGAUGGCGCUGCAGAAUCUGGAAGCGGUGCUAAAAGCAGCCGACUCUGGCAUCGA
.((((((((......)))).))))..........(((((((((((..((((((((((....))))...))))))..)..........((((((((.....))).))).)))))))))))) ( -52.40)
>DroGri_CAF1 19914 120 - 1
UGGCUGUUUGGGACUGGACAAGUCAACUAUGAAGCUGGUGCCAGGUGGCGCCACUGAGCAAACAGAGAUGGCGCUCAAAAAUCUGGAGGCGGUGCUGAAAGCAGCCGAUUCUGGCGUCGA
...(((((((.((((.....))))........((.(((((((....)))))))))...)))))))...(((((((.........((((.((((((.....))).))).))))))))))). ( -43.70)
>DroWil_CAF1 28964 120 - 1
UGGUUGCUUGGGAUUGGAUAAGUCAACCAUGAAACUGGUACCCGGCGGAGCCACUGAACAAACUCAAAAGGCUUUGGAGAAUUUGGAAGCUGUAUUAAAGGCAGCCGAUUCUGGUGUAGA
((((((((((........)))).)))))).........(((((..(((((((..(((......)))...))))))).((((((.((..(((........)))..)))))))))).))).. ( -33.20)
>DroMoj_CAF1 22252 120 - 1
CGGCUGUUUGGGCUUGGACAAGACUACGAUGAAACUGGUGCCAGGUGGCGCCACUGAGCAAACAGAGAUGGCGCUGCAAAAUCUGGAGGCAGUGCUUAAGGCAGCCGAUUCUGGCAUCGA
(((((((((..(((..(......(......)....(((((((....))))))))..)))..........((((((((...........))))))))..)))))))))............. ( -43.70)
>DroAna_CAF1 19263 120 - 1
UGGAUGUCUGGGCUUGGAUAAGGAUACCAUGAAGCUGGUUCCUGGUGGACCCACCGAGCAGGCUGAGAAGGCUCUGGAGAAUCUGGAGGCCGUCCUUAAGGCAGCCGAUUCUGGAGUGGA
......(((.((((((....((((.((((......))))))))((((....))))...)))))).)))..(((((..((((((.((..(((........)))..)))))))))))))... ( -47.80)
>consensus
CGGCUGUUUGGGACUGGACAAGUCAACCAUGAAACUGGUGCCAGGUGGAGCCACUGAGCAAACAGAGAAGGCGCUGGAGAAUCUGGAGGCGGUGCUAAAGGCAGCCGAUUCUGGCGUCGA
.....(((((.((((.....))))...........(((((((....))))))).....))))).......(((((..((((((.((..((..........))..)))))))))))))... (-22.97 = -24.05 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:29 2006