| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,267,945 – 15,268,053 |
| Length | 108 |
| Max. P | 0.980064 |
| Location | 15,267,945 – 15,268,053 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.58 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -15.89 |
| Energy contribution | -17.02 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.980064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15267945 108 + 22407834 UAGCAUUGUUGUUGUUUUUCGAGGCGAAUGGUGAUAGCUAUCGAUAGUACUU-UUCCAU----CGAUAGUGUCAAAACCAGUUGCUCUCAACUUUAUGAUAAAUAAAACCAGU------- (((((....)))))......(((((((.((((....(((((((((.(.....-..).))----)))))))......)))).)))).)))...(((((.....)))))......------- ( -27.30) >DroEre_CAF1 15508 106 + 1 U-GCCGUGUUGUUGUUUUUCGCGGCGAAUGGUGAUAACUAUCGAGGGUAC------------UCGAUAGUUCCAUUACCAGUUGCUCUCAGCUUUAUAACAUCUAAAACCUAU-UUGUAC .-((((((..(.....)..))))))...(((((((((((((((((....)------------)))))))))..)))))))((((....)))).....................-...... ( -32.90) >DroYak_CAF1 15754 120 + 1 UAGCCUUGUUGUUGUUUUUAGGGGCGAAUGGCGAUUUCGAUCGAUAGUUCGCAAUCCAUUGGUCAAUAGUUACAUUACCAGUUGUUUUCAGCUUUAUAACAUAUGCAAUAAAUUUUGCAG ......(((((((((..(((..(((.(((((..(((.(((.(....).))).)))))))).)))..)))..))).....(((((....)))))..))))))..(((((......))))). ( -27.30) >consensus UAGCCUUGUUGUUGUUUUUCGAGGCGAAUGGUGAUAACUAUCGAUAGUAC____UCCAU___UCGAUAGUUACAUUACCAGUUGCUCUCAGCUUUAUAACAUAUAAAACCAAU_UUG_A_ .....(((((((.(((....(((((((.(((((((.(((((((....................)))))))...))))))).)))).))))))...))))))).................. (-15.89 = -17.02 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:28 2006