Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,253,048 – 15,253,146 |
Length | 98 |
Max. P | 0.547947 |
Location | 15,253,048 – 15,253,146 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.03 |
Mean single sequence MFE | -26.63 |
Consensus MFE | -16.40 |
Energy contribution | -15.73 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.46 |
Mean z-score | -1.44 |
Structure conservation index | 0.62 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15253048 98 - 22407834 CUUUCAGCUUCUGUGGACGCAGCGAAGCUAUUUGCUUUCAUCCUGUUGAAUAAGUUUGGUUCUUUCGCUGAUUGCUAUGAGGGCCAUUUUGAUUUGAG ..((((((....(((((...((((((....)))))))))))...))))))((((((((((((((..((.....))...))))))))....)))))).. ( -24.80) >DroSec_CAF1 465 98 - 1 CUAUCAGCUUCUGUGGACCCAGCGGAGCUAUUUGCUUUCAUCCUGUUGGAUAAGUUUGGUUCUUUCGCUGAUUGCUAUCAGGGCCAUUUUGAUUUGGG ...((((..((.((((.(((((((((((((...((((..((((....)))))))).))))))...))))(((....))).)))))))...)).)))). ( -29.10) >DroSim_CAF1 98 98 - 1 CUAAUAGCUUCUGUGGACGCAGCGGAGUUAUUUGCUUUCAUCCUGUUGGAUAAGUUUGGUUCUUUCGCUGAUUGCUAUCAGAGCCAUUUUGAUUUGGG ........((((((((...((((((((..(((.((((..((((....))))))))..)))..))))))))....))).)))))(((........))). ( -26.60) >DroEre_CAF1 464 97 - 1 -AAUGUGCGUCUGUGGACGCAGUGCGGCUACUUGUUCUCAUCCUGCUGAAUUAGUUUGGCCCUUUCGCUGAUGGCUAUCAGGGCCAUUUUGAUUUGGG -....((((((....))))))........................(..((((((..(((((((...((.....))....)))))))..))))))..). ( -32.20) >DroYak_CAF1 419 97 - 1 -UAUCUGCUUCUGUGGAGGCAGUUAGACUACUUGUUCUCAUCCUGCUGAAUUAGUUUGGCUCUUUCGCUGAUUGCUAUUAGUGCCAUUUUGAUUUGGG -...(((((((....))))))).......................(..((((((..((((.((...((.....))....)).))))..))))))..). ( -27.20) >DroAna_CAF1 371 83 - 1 CUAUC------UCU------A---GUUCUAGUUGGUAACCUCGGGUUGAAUAAGCUUGGCUCUUUCGCUGAUGGCAAUCAGGGCCAUUUUGAUUUGGG .((((------.((------(---....)))..))))..(((((((..((......(((((((...((.....))....))))))).))..))))))) ( -19.90) >consensus CUAUCAGCUUCUGUGGACGCAGCGGAGCUAUUUGCUUUCAUCCUGUUGAAUAAGUUUGGCUCUUUCGCUGAUUGCUAUCAGGGCCAUUUUGAUUUGGG ..............(((...((((((....))))))....)))..(..(((.((..(((((((...((.....))....)))))))..)).)))..). (-16.40 = -15.73 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:27 2006