Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,675,373 – 1,675,493 |
Length | 120 |
Max. P | 0.588158 |
Location | 1,675,373 – 1,675,493 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.08 |
Mean single sequence MFE | -41.23 |
Consensus MFE | -40.20 |
Energy contribution | -39.45 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.11 |
Mean z-score | -1.52 |
Structure conservation index | 0.98 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1675373 120 + 22407834 AGGCGUUGCAGUUGAGUCCUGCGGCCAACGCUCAUUUCGGGAAAUGUGAAUUCGAUUAAAGUAAUGACUUUUUGAGUAGUCCUUUGGGGCGGAUAAGUUGGGCGAGCUCAGGUGUUUCGC ..(((..(((.((((((....((.(((((.(.(((((....))))).).((((((..(((((....))))))))))).((((....))))......))))).)).)))))).)))..))) ( -39.70) >DroSec_CAF1 1831 120 + 1 AGGCGUUGCAGUUGAGUCCUGCGGCCAACGCUCAUUUCGGGAAAUGCGAAUUCGAUUAAAGUAAUGACUUUUUGAGUAGCCCUUUGGGGCGGAGAAGUUGGGCGAGCUCAGGUGUUUCGC ..(((..(((.((((((....((.(((((.(((...(((.......)))((((((..(((((....))))))))))).((((....)))).)))..))))).)).)))))).)))..))) ( -43.60) >DroSim_CAF1 2719 120 + 1 AGGCGUUGCAGUUGAGUCCUGCGGCCAACGCUCAUUUCGGGAAAUGCGAAUUCGAUUAAAGUAAUGACUUUUUGAGUAGUCCUUUGGGGCGGAGAAGUUGGGCGAGCUCAGGUGUUUCGC ..(((..(((.((((((....((.(((((.(((...(((.......)))((((((..(((((....))))))))))).((((....)))).)))..))))).)).)))))).)))..))) ( -40.90) >DroYak_CAF1 2857 120 + 1 AGGCGUUGCAGUUGAGUCCUGCGGCCGACGUUCAUUUCGGGAAAUGCGAAUUCGAUUAAAGUAAUGACUUUUUGAGUAGUCCUUUGGGGCGUCGAAGUUGGGCGAGCUCAGGUGUUUCGC ..(((..(((.((((((....((.(((((...(((((....)))))(((((((((..(((((....))))))))))).((((....)))).)))..))))).)).)))))).)))..))) ( -40.70) >consensus AGGCGUUGCAGUUGAGUCCUGCGGCCAACGCUCAUUUCGGGAAAUGCGAAUUCGAUUAAAGUAAUGACUUUUUGAGUAGUCCUUUGGGGCGGAGAAGUUGGGCGAGCUCAGGUGUUUCGC ..(((..(((.((((((....((.((((((((((.((((.......)))).......(((((....))))).))))).((((....))))......))))).)).)))))).)))..))) (-40.20 = -39.45 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:37 2006