Locus 5369

Sequence ID 2L_DroMel_CAF1
Location 15,235,032 – 15,235,144
Length 112
Max. P 0.978334
window8524

overview

Window 4

Location 15,235,032 – 15,235,144
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.19
Mean single sequence MFE -27.54
Consensus MFE -25.62
Energy contribution -25.62
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.93
SVM decision value 1.81
SVM RNA-class probability 0.978334
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15235032 112 + 22407834
---AGGAGCGAAAUUUACAAAAUUACCAUGCAACACGCUUGAAAUUGCAAAAGUUUUUCAUUAUUCACUUUGUGGCUGCAGUCG-----AGUCGUCGAGUGAGUGAGAUUUUUGCAUGAA
---..(((((.........................))))).....((((((((((.....((((((((((..(((((.......-----)))))..)))))))))))))))))))).... ( -27.71)
>DroVir_CAF1 249697 108 + 1
---AG----AAAAUUUACAAAAUUACCAUGCAACACGCUUGAAAUUGCAAAAGUUUUUCAUUAUUCACUUUGUGGCUGCAGUCG-----AGUCGUCGAGUGAGUGAGAUUUUUGCAUGAA
---..----.................(((((((......(((((..((....)).)))))((((((((((..(((((.......-----)))))..)))))))))).....))))))).. ( -27.00)
>DroPse_CAF1 254378 115 + 1
AGCAGCAGCAAAAUUUACAAAAUUACCAUGCAACACGCUUGAAAUUGCAAAAGUUUUUCAUUAUUCACUUUGUGGCUGCAGUCG-----AGUCGUCGAGUGAGUGAGAUUUUUGCAUGAA
.((....)).................(((((((......(((((..((....)).)))))((((((((((..(((((.......-----)))))..)))))))))).....))))))).. ( -28.20)
>DroGri_CAF1 221724 113 + 1
---AG----AAAAUUUACAAAAUUACCAUGCAACACGCUUGAAAUUGCAAAAGUUUUUCAUUAUUCACUUUGUGGCUGCAGUCGAGUCGAGUCGUCGAGUGAGUGAGAUUUUUGCAUGAA
---..----.................(((((((......(((((..((....)).)))))((((((((((..(((((((......))..)))))..)))))))))).....))))))).. ( -27.00)
>DroWil_CAF1 274665 115 + 1
AACGGCAACAAAAUUUACAAAAUUACCAUGCAACACGCUUGAAAUUGCAAAAGUUUUUCAUUAUUCACUUUGUGGCUGCAGUCG-----AGUCGUCGAGUGAGUGAGAUUUUUGCAUGAA
...(....).................(((((((......(((((..((....)).)))))((((((((((..(((((.......-----)))))..)))))))))).....))))))).. ( -28.30)
>DroMoj_CAF1 276501 108 + 1
---AG----AAAAUUUACAAAAUUACCAUGCAACACGCUUGAAAUUGCAAAAGUUUUUCAUUAUUCACUUUGUGGCUGCAGUCG-----AGUCGUCGAGUGAGUGAGAUUUUUGCAUGAA
---..----.................(((((((......(((((..((....)).)))))((((((((((..(((((.......-----)))))..)))))))))).....))))))).. ( -27.00)
>consensus
___AG____AAAAUUUACAAAAUUACCAUGCAACACGCUUGAAAUUGCAAAAGUUUUUCAUUAUUCACUUUGUGGCUGCAGUCG_____AGUCGUCGAGUGAGUGAGAUUUUUGCAUGAA
..........................(((((((......(((((..((....)).)))))((((((((((..(((((............)))))..)))))))))).....))))))).. (-25.62 = -25.62 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:26 2006