Locus 5366

Sequence ID 2L_DroMel_CAF1
Location 15,232,185 – 15,232,282
Length 97
Max. P 0.516994
window8518

overview

Window 8

Location 15,232,185 – 15,232,282
Length 97
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 80.70
Mean single sequence MFE -16.23
Consensus MFE -10.20
Energy contribution -10.20
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.63
SVM decision value -0.03
SVM RNA-class probability 0.516994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15232185 97 - 22407834
---GUAUCCGCCAGUUGUUGCCGCAACUUUCUCCACAUUUUAGCGACAACUUUUUCCGCAAGUUUAGAAUUUCUUCUCGUUCUAUUUUUAGC-GUAUUUUU
---.........(((((((((.....................))))))))).....((((((..((((((........))))))..))).))-)....... ( -17.70)
>DroPse_CAF1 251118 90 - 1
---GUAUCCGCCAGUUGUUGCGGCAACUUUCUCCACAUUUUAGCGACAACUUUUUCCACAAGUUUAGAAUUUUUGCCCCCUCCC-----AUG-GCCCUC--
---......((((((((((((.....................))))))))........((((.........)))).........-----.))-))....-- ( -14.90)
>DroWil_CAF1 271019 94 - 1
ACGGCAUCCGCCAGUUGUUGCGGCAACUUUCUCCACAUUUUAGCGACAACUUUUUCCACAAGUUUAGAAUUUUUC-------UUUCUUUGUGAGAAUUUUU
..(((....)))(((((((((.....................)))))))))..(((((((((...(((.....))-------)...)))))).)))..... ( -22.50)
>DroYak_CAF1 193130 97 - 1
---GUAUCCAGCAGUUGUUGCGGCAACUUUCUCCACAUUUUAGCGACAACUUUUUCCACAAGUUUAGAAUUUCUUCCCGUUCUAUUUUUACG-GCAUUUUU
---.......(((((((((((.....................)))))))))........(((..((((((........))))))..)))...-))...... ( -16.80)
>DroAna_CAF1 188627 94 - 1
---GUAUUUGCCAGUUGUUGCGGCAACUUUCUCCACAUUUUAGCGACAACUUUUUCCACAAGUUUAGAAUUUCUUCUCGUUUCGUUCU---C-UUAUUUUU
---.........(((((((((.....................)))))))))........(((....(((...........))).....---)-))...... ( -10.60)
>DroPer_CAF1 247387 90 - 1
---GUAUCCGCCAGUUGUUGCGGCAACUUUCUCCACAUUUUAGCGACAACUUUUUCCACAAGUUUAGAAUUUUUGCCCCCUCCC-----AUG-GCCCUU--
---......((((((((((((.....................))))))))........((((.........)))).........-----.))-))....-- ( -14.90)
>consensus
___GUAUCCGCCAGUUGUUGCGGCAACUUUCUCCACAUUUUAGCGACAACUUUUUCCACAAGUUUAGAAUUUCUUCCCGUUCCAUUUU_AUG_GCAUUUUU
............(((((((((.....................))))))))).................................................. (-10.20 = -10.20 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:20 2006