Locus 5365

Sequence ID 2L_DroMel_CAF1
Location 15,231,822 – 15,231,914
Length 92
Max. P 0.688161
window8517

overview

Window 7

Location 15,231,822 – 15,231,914
Length 92
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 74.40
Mean single sequence MFE -9.12
Consensus MFE 0.00
Energy contribution 0.00
Covariance contribution 0.00
Combinations/Pair nan
Mean z-score -1.39
Structure conservation index -0.00
SVM decision value 0.32
SVM RNA-class probability 0.688161
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15231822 92 + 22407834
AAAAACAAAUCCAAUCUUCAAUUACUUUGGCUUAACUGAACCGGCAAGCGUUU-----AACAACAACAAA-AAAUCAAUUGAAAAAUCACAAUU-AAAU-
................(((((((..((((((((..(......)..))))(((.-----...)))..))))-.....)))))))...........-....- (  -8.30)
>DroPse_CAF1 250588 93 + 1
UAUUACAAAAGUAAA---GAAUGUUUCGGGAAGAACCUAAACCUAAAGAGAUUUUUCUCAGAAUUAUA----GGACAUGUAAAAUAUCGCAAUAUAAAUA
..(((((........---....((((.((......)).)))).....((((....)))).........----.....))))).................. ( -11.40)
>DroSec_CAF1 176041 93 + 1
AAUAACAAAUCCAAUCUUCAAUUACUUUGGCUUAACUGACCCGGCAAGCGUUU-----AACAACAACAAAAAAAUCAAUUGAAAAAUCACAAUU-AAAU-
................(((((((......((((..(......)..))))(((.-----...)))............)))))))...........-....- (  -8.20)
>DroSim_CAF1 182755 93 + 1
AAUAACAAAUCCAAUCUUCAAUUACUUUGGCUUAACUGACCCGGCAAGCGUUU-----AACAACAACAAAAAAAUCAAUUGAAAAAUCACAAUU-AAAU-
................(((((((......((((..(......)..))))(((.-----...)))............)))))))...........-....- (  -8.20)
>DroEre_CAF1 181434 88 + 1
AAUAACAAAUCCAAUCGUCAAUUACUUUGGCCUAACUGAACCCGCAAGCGUUU-----AAC-----CAAAAAAUUCAAUUGAAAAAUCACAAUU-AAAU-
................(((((.....))))).....(((((.(....).))))-----)..-----..........(((((........)))))-....- (  -9.50)
>consensus
AAUAACAAAUCCAAUCUUCAAUUACUUUGGCUUAACUGAACCGGCAAGCGUUU_____AACAACAACAAAAAAAUCAAUUGAAAAAUCACAAUU_AAAU_
.................................................................................................... (  0.00 =   0.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:20 2006