Locus 5364

Sequence ID 2L_DroMel_CAF1
Location 15,227,131 – 15,227,234
Length 103
Max. P 0.958885
window8516

overview

Window 6

Location 15,227,131 – 15,227,234
Length 103
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 81.91
Mean single sequence MFE -32.88
Consensus MFE -18.10
Energy contribution -18.58
Covariance contribution 0.48
Combinations/Pair 1.17
Mean z-score -2.84
Structure conservation index 0.55
SVM decision value 1.49
SVM RNA-class probability 0.958885
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15227131 103 + 22407834
UGCCCCCUCCCUUUGGUGGAUGCACCAUCCC-GAAUUCAGAGC--CCUGCUUUCAGGGUUCAUCGUUCACCGUUCACUGUUGAAUGCUGAAUGUUGACUGUUUUGC
(((..((.((....)).))..)))......(-(((..(((.((--((((....))))))(((.((((((.((((((....)))))).)))))).)))))).)))). ( -31.70)
>DroSec_CAF1 171291 104 + 1
UGCCCCCUCCCUUUGGGGGAUGCGCCAUCCCGGAAUUCAGAGC--CCUGUUUUCAGGGUUCAUCGUUCACCGUUCACUGUUGAAUGCUGAAUGUUGACUGUUUUGC
..(((((.......)))))...........(((((((((((((--((((....))))))))..((((((.((((((....)))))).)))))).)))..)))))). ( -38.10)
>DroSim_CAF1 178051 92 + 1
UGCCCCCUCCCUUUGGUGGAUGCACCAUCCCUGAAUUCAGAGC--CCUGCUUUCAGGGUUCAUCGUUCACCGUUCACUGUUGAAUGCUGAAUGU------------
(((..((.((....)).))..)))....(((((((..(((...--.)))..))))))).....((((((.((((((....)))))).)))))).------------ ( -31.20)
>DroEre_CAF1 176715 105 + 1
UGCCCACUCCCUUUGGUGGAUGCACCAUCCC-GAACUCCGAAUUUUCUGCUUUCGGGGUUCAUCGGCCACCGUUCACUGUUGCAUGUUGAAUGUUGACUGCUUUGC
.(((.........(((((....)))))....-((((((((((.........))))))))))...)))((.(((((((........).)))))).)).......... ( -30.00)
>DroYak_CAF1 187805 96 + 1
UGCCCUCUCCCUUUGGUGGAUGCAUUAUCUU-GCACUUUGAAU--CCUGCUUUCAGGGUUCAUCGUCCACCGUUCACUGU-------UGAAUGUGGACUGUUUUGC
..............((((((((((......)-))....(((((--((((....)))))))))..)))))))((((((...-------.....))))))........ ( -33.40)
>consensus
UGCCCCCUCCCUUUGGUGGAUGCACCAUCCC_GAAUUCAGAGC__CCUGCUUUCAGGGUUCAUCGUUCACCGUUCACUGUUGAAUGCUGAAUGUUGACUGUUUUGC
..............((((((((......(((.(((..(((......)))..))).))).....))))))))((((((........).))))).............. (-18.10 = -18.58 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:19 2006