Locus 5362

Sequence ID 2L_DroMel_CAF1
Location 15,215,542 – 15,215,634
Length 92
Max. P 0.598371
window8513

overview

Window 3

Location 15,215,542 – 15,215,634
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 98.91
Mean single sequence MFE -14.47
Consensus MFE -13.12
Energy contribution -13.45
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.12
Structure conservation index 0.91
SVM decision value 0.13
SVM RNA-class probability 0.598371
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15215542 92 - 22407834
UAAGUUGAAACCAGCAAAAUGAUUUUCAUUUCAAUUAUUUAUUGAUUGAUUUGCAAUUUGUAACCGACCAAAAUGCUGCACACCUGCACAUA
...((((....))))..((((.....))))(((((((.....)))))))...(((.((((........)))).)))((((....)))).... ( -14.70)
>DroSec_CAF1 159848 92 - 1
UAAGUUGAAACCAGCAAAAUGAUUUUCAUUUCAAUUAUUUAUUGAUUGAUUUGCAAUUUGUAACCGACCAAAAUGCUGCACACCUGCACAUA
...((((....))))..((((.....))))(((((((.....)))))))...(((.((((........)))).)))((((....)))).... ( -14.70)
>DroSim_CAF1 163144 92 - 1
UAAGUUGAAACCAGCAAAAUGAUUUUCAUUUCAAUUAUUUAUUGAUUGAUUUGCAAUUUGUAACCGACCAAAAUGCUGCACACCUGCACAUA
...((((....))))..((((.....))))(((((((.....)))))))...(((.((((........)))).)))((((....)))).... ( -14.70)
>DroEre_CAF1 162599 92 - 1
UAAGUUGAAACCAGCAAAAUGAUUUUCAUUUCAAUUAUUUAUUGAUUGAUUUGCAAUUUGUAACCGACCAAAAUGCUGCACACCUGCACAUA
...((((....))))..((((.....))))(((((((.....)))))))...(((.((((........)))).)))((((....)))).... ( -14.70)
>DroYak_CAF1 176299 92 - 1
UAAGUUGAAACCAGCAAAAUGAUUUUCAUUUCAAUUAUUUAUUGAUUGAUUUGCAAUUUGUAACCGACCAAAAUACUGCACACCUGCACAUA
...((((....))))...(..(.((.((..(((((((.....)))))))..)).)).)..)...............((((....)))).... ( -12.70)
>DroAna_CAF1 168172 91 - 1
UAAGUUGAAACCAGCAAAAUGAUUUUCAUUUCAAUUAUUUAUUGAUUGAUUUGCAAUUUGUAACCGACCAAAA-GUUGCACACCUGCACAUA
...((((....))))...(((.........(((((((.....)))))))..((((...((((((.........-))))))....))))))). ( -15.30)
>consensus
UAAGUUGAAACCAGCAAAAUGAUUUUCAUUUCAAUUAUUUAUUGAUUGAUUUGCAAUUUGUAACCGACCAAAAUGCUGCACACCUGCACAUA
...((((....))))...(..(.((.((..(((((((.....)))))))..)).)).)..)...........(((.((((....))))))). (-13.12 = -13.45 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:16 2006