Locus 5361

Sequence ID 2L_DroMel_CAF1
Location 15,196,343 – 15,196,447
Length 104
Max. P 0.986105
window8512

overview

Window 2

Location 15,196,343 – 15,196,447
Length 104
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 73.66
Mean single sequence MFE -37.75
Consensus MFE -22.00
Energy contribution -22.20
Covariance contribution 0.20
Combinations/Pair 1.29
Mean z-score -2.25
Structure conservation index 0.58
SVM decision value 2.03
SVM RNA-class probability 0.986105
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15196343 104 - 22407834
GCCAACGUGCCAUAAAAUGCGCAUAAUGUGGCACGGAUGUGCCAGUCCACGUUGGUAAUUUGGCGCGUGAGCAUCGCCGAUUAUCAUUUUUGCCACAAGUG---G--CA
((((..((((........))))....(((((((..((((((((((......))))))..(((((((....))...)))))....))))..)))))))..))---)--). ( -41.10)
>DroVir_CAF1 195476 102 - 1
GUCG----GCCAUAAAAUGCGCAUAAUGUUGUGCGGAUGUGUCAGUGCACGUUUGUUAUUUGGCGAGACAACAACAGCGG-CAGCGGCAGCGGCAGCGGUAGCGG--UA
(((.----((((......(((((......)))))((((((((....))))))))......))))..))).......((.(-(.((.((.......)).)).)).)--). ( -32.70)
>DroPse_CAF1 176461 87 - 1
GUUGUCGUGCCAUAAAAUCCGCAUAAUGUUGCACGGAUGUGUCAGUGCACGUUUGUUAUUUGGCGCGUGAGCACCGCU----------UUUGG----------GG--UU
(((..(((((((........(((......)))((((((((((....))))))))))....)))))))..)))(((.(.----------...).----------))--). ( -30.10)
>DroSec_CAF1 140912 107 - 1
GCCAACGUGCCAUAAAAUGCGCAUAAUGUGGCACGGAUGUGCCAGUGCACGUUGGUAAUUUGGCGCGUGAGCAUCGCCGAGUAUCGUUCUUGCCACCAGUGGGGG--CA
(((((((((((.........((.....))(((((....))))).).)))))))))).(((((((((....))...)))))))...(((((..(.....)..))))--). ( -45.10)
>DroYak_CAF1 156590 103 - 1
GCCAAUGUGCCAUAAAAUGCGCAUAAUGUGGCACGGAUGUGUCAGUGCACGUUGGUAAUUUGGCGCGUGAGCAUCGCCGAGUAUCGUUCUUGCCUC-AGUG---G--CA
((((((((((........))))))..((.(((((.(((((((....))))))).)).(((((((((....))...))))))).........))).)-).))---)--). ( -40.10)
>DroAna_CAF1 147861 96 - 1
GCCGACGUGCCAUAAAAUGCGCAUAAUGUGCCGCGGAUGUGCCAGUGCACGUUUGUUAUUUGGCGCGUGAGCAACGCU----------UUGGGCUUAAGUG---GAGCG
((..((((((((......((((.....)))).((((((((((....))))))))))....))))))))..))..((((----------((..((....)))---))))) ( -37.40)
>consensus
GCCAACGUGCCAUAAAAUGCGCAUAAUGUGGCACGGAUGUGCCAGUGCACGUUGGUAAUUUGGCGCGUGAGCAUCGCCGA_UAUCGUUUUUGCCAC_AGUG___G__CA
((((.(((((((((..((....))..)))))))))(((((((....))))))).......))))((....))..................................... (-22.00 = -22.20 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:15 2006