Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,182,333 – 15,182,427 |
Length | 94 |
Max. P | 0.575554 |
Location | 15,182,333 – 15,182,427 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 90.88 |
Mean single sequence MFE | -20.35 |
Consensus MFE | -15.28 |
Energy contribution | -15.64 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -1.64 |
Structure conservation index | 0.75 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15182333 94 - 22407834 AUAUAUAAAAAGUAUGGCAAAAGUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUUAGAGCAGAC--UU .........((((...((..(((((....((((((((.......(((.(((((....))))).))).))))))))...)))))...))..))--)) ( -22.10) >DroSec_CAF1 127331 94 - 1 AUAUAUAAAAAGUAUGGCAAAAGUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUCAGAGCAGAC--UU .........((((..((((.....)))).((((..(((((((((((..(((((....))))).....)))))).......))))).))))))--)) ( -21.31) >DroSim_CAF1 130372 93 - 1 AUAUAUAAAAAGU-UAGCAAAAGUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUUAGAGCAGAC--UU .........((((-(.((..(((((....((((((((.......(((.(((((....))))).))).))))))))...)))))...)).)))--)) ( -23.10) >DroEre_CAF1 130419 93 - 1 AUAUAUAAAGAGUAUGA---UUUUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUUGGAGCAGACUUUU .......((((((.((.---(((......((((((((.......(((.(((((....))))).))).))))))))........))).)).)))))) ( -20.14) >DroYak_CAF1 143019 95 - 1 AUAUAUAAAAACUAUGGCAAAAGUUGCUGUUGCGGUUGAAGUGUUUGAUGCUUCAAGGAG-AUUCAAAACCACAGAUAAAUUCAGAGCAGACAUUU ...............((((.....)))).(((((((((((.(.(((((....))))).).-.))))..)))...((.....))...))))...... ( -15.10) >consensus AUAUAUAAAAAGUAUGGCAAAAGUUGCUGUUGCGGUUGAAGUGGUUGAUGCUUCAAGGAGCAAUAAAAACCGCAGAUAAAUUUAGAGCAGAC__UU .......................(((((..(((((((.......(((.(((((....))))).))).)))))))((.....))..)))))...... (-15.28 = -15.64 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:12 2006