Locus 5358

Sequence ID 2L_DroMel_CAF1
Location 15,176,325 – 15,176,420
Length 95
Max. P 0.715655
window8508

overview

Window 8

Location 15,176,325 – 15,176,420
Length 95
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.62
Mean single sequence MFE -19.25
Consensus MFE -13.62
Energy contribution -13.76
Covariance contribution 0.14
Combinations/Pair 1.09
Mean z-score -1.38
Structure conservation index 0.71
SVM decision value 0.39
SVM RNA-class probability 0.715655
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15176325 95 + 22407834
----------------CGGCAGAAUAAAAACGAAAAAGAUAAAUAUGUCGUAAAAGUUUUUUAUUUGCGUUUUAUUU---------UUUUUGAUACAGAAAAUGACUAACUUGUUGGCUG
----------------((((..(((((...(((((((((((((.....((((((.........)))))).)))))))---------))))))...((.....))......))))).)))) ( -16.80)
>DroVir_CAF1 171629 90 + 1
----------------CG--AGAGUUGCGCCAGAAAAGAUAAAUAUGUCGUAAAAGUUUUUUAUUUGCGUUUUAUUU------------UUGAUACAGCAAAUGACUAACUUGUUGGCUG
----------------..--........(((((....((((....))))....(((((..((((((((((.(((...------------.))).)).))))))))..))))).))))).. ( -21.00)
>DroPse_CAF1 151167 104 + 1
----------------CGACAAAAUAAAAACGAAAAAGAUAAAUAUGUCGUAAAAGUUUUUUAUUUGCGUUUUAUUUUUGUAUUUUUUUUUGAUACAGCAAAUGACUAACUUGUCGGCUG
----------------((((.................((((....))))....(((((..((((((((..........((((((.......))))))))))))))..))))))))).... ( -20.00)
>DroGri_CAF1 146626 90 + 1
----------------CG--AGAGUUACGCCAGAAAAGAUAAAUAUGUCGUAAAAGUUUUUUAUUUGCGUUUUAUUU------------UUGAUACAACAAAUGACUAACUUGUUGGCUG
----------------..--........(((((....((((....))))....(((((..(((((((.((.(((...------------.))).))..)))))))..))))).))))).. ( -16.70)
>DroWil_CAF1 195969 106 + 1
AAAACAACAAAAACGACAACAGAAAAAAAAC--AGAAGAUAAAUAUGUCGUAAAAGUUUUUUAUUUGCGUUUUAUUU------------UUGAUACAGCAAAUGACUAACUUGUUGGCUG
....((((....((((((.............--............))))))..(((((..((((((((((.(((...------------.))).)).))))))))..))))))))).... ( -21.51)
>DroPer_CAF1 153973 104 + 1
----------------CGACAAAAUAAAAACGAAAAAGAUAAAUAUGUCGUAAAAGUUUUUUAUUUGCGUUUUAUUUUUGUAUUUUUUUUUGAUACGGCAAAUGUCUAGCUUGUCGGCUG
----------------(((((((((((((((......((((....))))......).)))))))))((....((((((((((((.......))))))).)))))....)).))))).... ( -19.50)
>consensus
________________CGACAGAAUAAAAACGAAAAAGAUAAAUAUGUCGUAAAAGUUUUUUAUUUGCGUUUUAUUU____________UUGAUACAGCAAAUGACUAACUUGUUGGCUG
..............................................((((...(((((..((((((((((.(((................))).)).))))))))..)))))..)))).. (-13.62 = -13.76 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:11 2006