Locus 5357

Sequence ID 2L_DroMel_CAF1
Location 15,172,337 – 15,172,440
Length 103
Max. P 0.634256
window8507

overview

Window 7

Location 15,172,337 – 15,172,440
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 90.54
Mean single sequence MFE -28.58
Consensus MFE -23.80
Energy contribution -23.42
Covariance contribution -0.39
Combinations/Pair 1.19
Mean z-score -1.85
Structure conservation index 0.83
SVM decision value 0.21
SVM RNA-class probability 0.634256
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15172337 103 - 22407834
GGACAUCGUUGAUGGGGAUGUUAGCGACAACGAUUGCAUUCAAGCAGCAGAAGAAAUGUUGCAGCUGGGAAACUUUUGGCAAUUAGCAAUUCUAAUGCAAGCG
.....((((((((......))))))))...((.(((((((...((((((.......)))))).(((((....))...))).............))))))).)) ( -27.60)
>DroPse_CAF1 145813 103 - 1
UGUCGACGUUGAUGGCGAUGUCAACGACAACGAUUGCAUUCGAGCAGCAGAAGAAAUGUUGCAGUUGGAAAACUUUUGGCAAUUAGCAAUUCUAAUGCAAACG
(((((((((((....)))))))...)))).((.(((((((.((((((((.......)))))).((..((.....))..))..........)).))))))).)) ( -30.20)
>DroSec_CAF1 117330 102 - 1
GGAC-UCGUUGAUGGGAAUGUUAGCGACAACGAUUGCAUUCAAGCAGCAGAAGAAAUGUUGCAGCUGGGAAACUUUUGGCAAUUAGCAAUUCUAAUGCAAGCG
....-((((((((......))))))))...((.(((((((...((((((.......)))))).(((((....))...))).............))))))).)) ( -27.40)
>DroYak_CAF1 132917 103 - 1
UGACAACGUUGAUGGGGAUGUCAGCGACAACGAUUGCAUUCAAGCAGCAGAAGAAAUGUUGCAGCUGCAAAACUUUUGGCAAUUAGCAAUUCUAAUGCAAGCG
......(((((((......)))))))....((.(((((((...((((((.......)))))).((((.....(....).....))))......))))))).)) ( -26.30)
>DroAna_CAF1 124337 98 - 1
-----ACGUUGAUGGCGAUGUCGGGCACGAGGAUUGCAUUCAAGCAGCAGAAGAAAUGUUGCAGUUGGAAAACUUUUGGCAAUUAGCAAUUCUAAUGCAAACG
-----((((((....))))))((.(((..((((((((......((((((.......)))))).((..((.....))..)).....))))))))..)))...)) ( -29.80)
>DroPer_CAF1 148601 103 - 1
UGUCGACGUUGAUGGCGAUGUCAACGACAACGAUUGCAUUCGAGCAGCAGAAGAAAUGUUGCAGUUGGAAAACUUUUGGCAAUUAGCAAUUCUAAUGCAAACG
(((((((((((....)))))))...)))).((.(((((((.((((((((.......)))))).((..((.....))..))..........)).))))))).)) ( -30.20)
>consensus
UGAC_ACGUUGAUGGCGAUGUCAGCGACAACGAUUGCAUUCAAGCAGCAGAAGAAAUGUUGCAGCUGGAAAACUUUUGGCAAUUAGCAAUUCUAAUGCAAACG
......(((((((......)))))))....((.(((((((...((((((.......)))))).((..(((...)))..)).............))))))).)) (-23.80 = -23.42 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:10 2006