Locus 5355

Sequence ID 2L_DroMel_CAF1
Location 15,167,976 – 15,168,078
Length 102
Max. P 0.596362
window8504

overview

Window 4

Location 15,167,976 – 15,168,078
Length 102
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 79.91
Mean single sequence MFE -29.55
Consensus MFE -21.95
Energy contribution -21.48
Covariance contribution -0.47
Combinations/Pair 1.08
Mean z-score -1.14
Structure conservation index 0.74
SVM decision value 0.13
SVM RNA-class probability 0.596362
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 15167976 102 + 22407834
UAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGGCGCGUUAAGGCAAAUGGGUCAUCAGCGUGCCAU-----CAGACAAUGGACCCACCAAACCGGUGGAC------
..(((.(((((((((((((((((((.((.(((.....))).)))))))))))))..)))))))).))).((((-----......))))..(((((.....)))))..------ ( -34.40)
>DroVir_CAF1 156504 109 + 1
UAACGAUGAUGGCUUUUGUUUUGGCAGUU-UGAUAGCAGGCGCGUUAAAGCAAAUGGGUCAUCAGCGAGCCAUUGGCCCACACAAUAGACCAAAAG---GGGGGCACACGAUA
...((.(((((((((((((((((((.(((-((....)))))..)))))))))))..)))))))).)).(((((((.......))))...((.....---.)))))........ ( -34.40)
>DroPse_CAF1 139839 91 + 1
UAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGACGCGUUAAGGCAAAUGGGUCAUCAGCGUGGCAU-----CAGACAAUGGACCGAGCG-----------------
......(((((((((((((((((((.((.(((.....))).)))))))))))))..))))))))((.(((..(-----((.....))).))).)).----------------- ( -26.10)
>DroGri_CAF1 132847 93 + 1
UAACGAUGAUGGCUUUUGUUUUGGCAGUU-UGAUAGCAGGCGCGUUAAAGCAAAUGGGUCAUCAGCGAGCCAUUGGCCCACACAAUGAACCAAG-------------------
...((.(((((((((((((((((((.(((-((....)))))..)))))))))))..)))))))).))...(((((.......))))).......------------------- ( -30.60)
>DroWil_CAF1 184519 94 + 1
UAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGUCGGCGCGUUAAAGCAAAUGGGUCAUCAGCGAACCGC-----CAGACAAUGGACUGACUAGAA--------------
...((.(((((((((((((((((((.((.(((.....))).)))))))))))))..)))))))).)).....(-----((.....)))...........-------------- ( -25.70)
>DroPer_CAF1 142634 91 + 1
UAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGACGCGUUAAGGCAAAUGGGUCAUCAGCGUGGCAU-----CAGACAAUGGACCGAGCG-----------------
......(((((((((((((((((((.((.(((.....))).)))))))))))))..))))))))((.(((..(-----((.....))).))).)).----------------- ( -26.10)
>consensus
UAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGGCGCGUUAAAGCAAAUGGGUCAUCAGCGAGCCAU_____CAGACAAUGGACCGAGCG_________________
...((.(((((((((((((((((((.(((.........)))..)))))))))))..)))))))).)).............................................. (-21.95 = -21.48 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:07 2006