| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,167,281 – 15,167,387 |
| Length | 106 |
| Max. P | 0.809636 |
| Location | 15,167,281 – 15,167,387 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.89 |
| Mean single sequence MFE | -30.56 |
| Consensus MFE | -21.07 |
| Energy contribution | -20.90 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.809636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15167281 106 - 22407834 UGCGUCUCAAGACACUAAAGCUAAUCGACAACGAACUGCAGGAUAUAUCCGAGCGGAGUUUCAGGUGAGUGCUUCCCUCUGGA--AAAGUG-G--CGAGUCAC---GCUGGCAA ((((((....)))....(((((..(((....))).((((.(((....)))..)))))))))(((((((.(((((((....)))--.....)-)--))..))))---.)))))). ( -28.30) >DroVir_CAF1 156055 105 - 1 UGCGUCUGAAGACACUGAAGUUAAUCGACAAUGAGCUGCAGGACAUAUCCGAGCGCAGUUUCAGGUGAGUGUGU---GU---G--GAGGUCAACACCAGUGAUGGGGUUGGCA- ...(((....))).(((.((((...........)))).)))......((((.(((((.((......)).)))))---.)---)--)).((((((.(((....))).)))))).- ( -31.30) >DroPse_CAF1 139364 93 - 1 UGCGCCUCAAGACACUGAAGCUAAUCGACAACGAGCUGCAGGACAUAUCCGAGCGGAGUUUCAGGUGAGUGU----------A--AAAGAA-G--AAA---AC---GGGGGCGA ..((((((...((.((((((((..(((....))).((((.(((....)))..))))))))))))))..((..----------.--......-.--...---))---.)))))). ( -29.12) >DroEre_CAF1 113713 106 - 1 UGCGUCUCAAGACACUGAAGCUAAUCGACAACGAACUGCAGGAUAUAUCCGAGCGGAGUUUCAGGUGAGUGCCUUCCACUGGA--AAAGAG-G--CGAGUCAC---GUUGGCAG ((((((....))).((((((((..(((....))).((((.(((....)))..))))))))))))((((.((((((((...)))--....))-)--))..))))---....))). ( -36.20) >DroAna_CAF1 119156 99 - 1 UGCGUCUCAAGACAUUGAAGCUAAUCGACAACGAACUGCAGGAUAUAUCCGAGCGGAGUUUCAGGUGAGUGC---CCAUGGGAGGAAAGUG-C--CGUGUCAU---GU------ .(((.((((.....((((((((..(((....))).((((.(((....)))..)))))))))))).)))))))---.(((((.(((......-)--).).))))---).------ ( -29.30) >DroPer_CAF1 142159 93 - 1 UGCGCCUCAAGACACUGAAGCUAAUCGACAACGAGCUGCAGGACAUAUCCGAGCGGAGUUUCAGGUGAGUGU----------A--AAAGAA-G--AAA---AC---GGGGGCGA ..((((((...((.((((((((..(((....))).((((.(((....)))..))))))))))))))..((..----------.--......-.--...---))---.)))))). ( -29.12) >consensus UGCGUCUCAAGACACUGAAGCUAAUCGACAACGAACUGCAGGACAUAUCCGAGCGGAGUUUCAGGUGAGUGC__________A__AAAGAG_G__CGAGUCAC___GUUGGCAA .(((.((((.....((((((((..(((....))).((((.(((....)))..)))))))))))).))))))).......................................... (-21.07 = -20.90 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:06 2006