Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 15,163,999 – 15,164,099 |
Length | 100 |
Max. P | 0.915244 |
Location | 15,163,999 – 15,164,099 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 73.54 |
Mean single sequence MFE | -21.23 |
Consensus MFE | -7.08 |
Energy contribution | -9.60 |
Covariance contribution | 2.52 |
Combinations/Pair | 1.24 |
Mean z-score | -2.02 |
Structure conservation index | 0.33 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15163999 100 + 22407834 UAUACACACGCACCGCAAGCUCACCAAACGCACA----------CACAUAUGUAUGUUCGUUGGAGUGGACCACAUAUGAACUUAAAGUUUUUAUGAUUCUAA--AAGCUGC ..............(((.(((..((((.((.(((----------.((....)).))).))))))..((((...((((.((((.....)))).))))..)))).--.)))))) ( -19.80) >DroSec_CAF1 108997 96 + 1 UAUACACACGCACCGCAAGCUCACCAAGCGCACA----------CACAUAUG----UGCGUUGGAGUGGACCACAUAGGAACUUAAAGUUUUUAUGAUUCUAA--AAUCUGC ..............(((.((((....((((((((----------......))----)))))).))))(((...(((((((((.....)))))))))..)))..--....))) ( -25.30) >DroSim_CAF1 108761 96 + 1 UAUACACACGCACCGCAAGCUCACCAAGCGCACA----------CACAUAUG----UGCGUUGGAGUGGACCACAUAGGAACUUAAAGUUUUUAUGAUUCUAA--UAGCUGC ..............(((.(((..((((.((((((----------......))----))))))))..((((...(((((((((.....)))))))))..)))).--.)))))) ( -27.10) >DroYak_CAF1 124677 106 + 1 UAUACACACGCACCGCAAACUCACCAAAAGUACACACACUCACACACAUAUG----UGCAAAGGAGUGGACCACAUUGGAACUUAAAGUUUUAAUGAUUUCAU--AAGCCAC ..............((....................(((((...(((....)----)).....))))).....(((((((((.....))))))))).......--..))... ( -18.40) >DroAna_CAF1 115889 90 + 1 UGUGCACACGCACCGCAAACUCACACAAC-UACA----------CACCCAAG----AGUAAUGGAGUGGACCUUACUUAAAUAUA-------UAAGAUCGCACAUACACUAA (((((...(((.(((...((((.......-....----------.......)----)))..))).)))((.((((..........-------)))).)))))))........ ( -15.57) >consensus UAUACACACGCACCGCAAGCUCACCAAACGCACA__________CACAUAUG____UGCGUUGGAGUGGACCACAUAGGAACUUAAAGUUUUUAUGAUUCUAA__AAGCUGC ............((....((((....((((((........................)))))).))))))....(((((((((.....)))))))))................ ( -7.08 = -9.60 + 2.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:05 2006