| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 15,155,741 – 15,155,837 |
| Length | 96 |
| Max. P | 0.872735 |
| Location | 15,155,741 – 15,155,837 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.27 |
| Mean single sequence MFE | -34.52 |
| Consensus MFE | -22.95 |
| Energy contribution | -24.48 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.872735 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 15155741 96 - 22407834 GAGGAGUGGAGUGGCUAGCAGGACUAGCCGGCAUAGCAGUAAUGGCAAAAACCGCCGACAAAUCUGCUGCAUUGCCCCCACGCUCACACACACAUC (((..((((...((((((.....))))))((((..((((((..(((.......)))((....))))))))..)))).)))).)))........... ( -36.50) >DroPse_CAF1 125502 93 - 1 GUGGAUUGUGGCAGCGUGAGGCAGUAGCCCGGAUGGUAGUAAUGGCAAAAACCGCCGACAAAUCUGCUGCAUUGCCCAGCCACCC---CGCAGUCC ..(((((((((..((.((.((((((.((.(((((....((...(((.......))).))..)))))..))))))))))))....)---)))))))) ( -34.20) >DroSec_CAF1 100778 96 - 1 GAGGAGUGGAGUGGCUAGCAGGACUAGCCGGCAUAGCAGUAAUGGCAAAAACCGCCGACAAAUCUGCUGCAUUGCCCCCACGCUCAAACACACAAC (((..((((...((((((.....))))))((((..((((((..(((.......)))((....))))))))..)))).)))).)))........... ( -36.50) >DroSim_CAF1 100544 96 - 1 GAGGAGUGGAGUGGCUAGCAGGACUAGCCGGCAUAGCAGUAAUGGCAAAAACCGCCGACAAAUCUGCUGCAUUGCCCCCACGCUCACACACACAAC (((..((((...((((((.....))))))((((..((((((..(((.......)))((....))))))))..)))).)))).)))........... ( -36.50) >DroYak_CAF1 116522 92 - 1 GACGAGUGGAGUGGCUAGCAGGACUAGCCGGCAUAGCAGUAAUGGCAAAAACCGCCGACAAAUCUGCUGCAUUGCCCCCACACUCACACACA---- .....(((((((((((((.....))))))((((..((((((..(((.......)))((....))))))))..)))).....)))).)))...---- ( -35.00) >DroAna_CAF1 106899 93 - 1 GA-GAGAUGACUGGGCUGAGAGGCUAGUCGGUGUAGCAGUAAUGGCAAAAACCGCCGACAAAUCUGCUGCAUUGCCCCCACAUACACACAGAAA-- ..-.....((((((.((....))))))))((((((((((...((((.......))))......)))))))))).....................-- ( -28.40) >consensus GAGGAGUGGAGUGGCUAGCAGGACUAGCCGGCAUAGCAGUAAUGGCAAAAACCGCCGACAAAUCUGCUGCAUUGCCCCCACACUCACACACACA_C ...(((((....((((((.....))))))((((..((((((..(((.......)))((....))))))))..))))....)))))........... (-22.95 = -24.48 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:04 2006